View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17487_low_36 (Length: 208)

Name: NF17487_low_36
Description: NF17487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17487_low_36
NF17487_low_36
[»] chr4 (18 HSPs)
chr4 (13-193)||(27412444-27412620)
chr4 (13-185)||(27425592-27425762)
chr4 (16-193)||(27566144-27566319)
chr4 (13-193)||(27570239-27570418)
chr4 (13-77)||(27420294-27420358)
chr4 (13-71)||(27423114-27423172)
chr4 (13-77)||(27415510-27415574)
chr4 (151-193)||(27516920-27516962)
chr4 (100-153)||(27563634-27563687)
chr4 (116-193)||(27420176-27420249)
chr4 (23-71)||(27444985-27445033)
chr4 (151-193)||(27466601-27466643)
chr4 (20-70)||(27498326-27498376)
chr4 (18-67)||(27526289-27526338)
chr4 (116-193)||(27415395-27415468)
chr4 (18-70)||(27501228-27501280)
chr4 (18-70)||(27516786-27516838)
chr4 (19-67)||(27557394-27557442)


Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 27412620 - 27412444
Alignment:
Q  13 agaaaatgatgcccttctgatgataccagagaaacgaaaacccatttttgtatgtgttagaacttaaattcaaatggttgtaggaagacttgtaagcaag 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27412620 agaaaatgatgcccttctgatgataccagagaaacgaaaacccatttttgtatgtgttagaacttaaattcaaatggttgtaggaagacttgtaagcaag 27412521  T
Q  113 aagcaagtttttgaaattagaatggtttaggatgtgaatgaatgatttgtgtttgtcctaaatgcttgcagccatgaatat 193  Q
    ||||||||||||||||||| |||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||    
T  27412520 aagcaagtttttgaaattaaaatggtttaggatgtga----atgatttgtgtttgtcctaaatgcttgcagccatgaatat 27412444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 13 - 185
Target Start/End: Complemental strand, 27425762 - 27425592
Alignment:
Q  13 agaaaatgatgcccttctgatgataccagagaaacgaaaacccatttttgtatgtgttagaacttaa----attcaaatggttgtaggaagacttgtaag 108  Q
    ||||||||||||| |||||||||||||||  ||||||||||||||| |||||||||||| ||||| |    |||||  |  ||  |  ||||| ||||||    
T  27425762 agaaaatgatgcctttctgatgataccagcaaaacgaaaacccattgttgtatgtgttaaaacttgagaatattcagtt--ttaaaaaaagacctgtaag 27425665  T
Q  109 caagaagcaagtttttgaaattagaatggtttaggatgtgaatgaatgatttgtgtttgtcctaaatgcttgcagcc 185  Q
    |||||||||||||||||||||| ||||||||||||||||||    |||||||||||| |||||||||||||| ||||    
T  27425664 caagaagcaagtttttgaaattggaatggtttaggatgtga----atgatttgtgttggtcctaaatgcttgtagcc 27425592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 27566144 - 27566319
Alignment:
Q  16 aaatgatgcccttctgatgataccagagaaacgaaaacccatttttgtatgtgttagaacttaaattcaaatggttgtaggaa-gacttgtaagcaagaa 114  Q
    ||||||||||||| |||| |||| || ||||||||||||||||  |||||| |||  ||||| |    || ||||| ||  || ||||||||||||||||    
T  27566144 aaatgatgcccttttgataatactagggaaacgaaaacccattgctgtatgcgttcaaacttgagaaaaattggttttaaaaaagacttgtaagcaagaa 27566243  T
Q  115 gcaagtttttg-aaattagaatggtttaggatgtgaatgaatgatttgtgtttgtcctaaatgcttgcagccatgaatat 193  Q
    ||||||||||| ||||| |||||||||||||||||||    ||||||||||| |||||||||||||| | ||||||||||    
T  27566244 gcaagtttttggaaattggaatggtttaggatgtgaa----tgatttgtgttggtcctaaatgcttgtaaccatgaatat 27566319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 13 - 193
Target Start/End: Original strand, 27570239 - 27570418
Alignment:
Q  13 agaaaatgatgcccttctgatgataccagagaaacgaaaacccatttttgtatgtgttagaacttaaattcaaatggttgt---aggaagacttgtaagc 109  Q
    |||||| |||||||||||||||||||||| |  ||||||||||||||||||||||||||  |||| |    |||||||| |   |  || |||| |||||    
T  27570239 agaaaaagatgcccttctgatgataccagggggacgaaaacccatttttgtatgtgttaacacttgagaataaatggtttttaaataaaaacttttaagc 27570338  T
Q  110 aagaagcaagtttttgaaattagaatggtttaggatgtgaatgaatgatttgtgtttgtcctaaatgcttgcagccatgaatat 193  Q
    || || ||||||||| | ||| ||||| |||||||||    ||||||||||||||| || |||||||||||||| |||||||||    
T  27570339 aataaccaagtttttcagatttgaatgctttaggatg----tgaatgatttgtgttggttctaaatgcttgcagtcatgaatat 27570418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 27420358 - 27420294
Alignment:
Q  13 agaaaatgatgcccttctgatgataccagagaaacgaaaacccatttttgtatgtgttagaactt 77  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||| |||||    
T  27420358 agaaaatgatgcctttctgatgataccagggaaacgaaaacccattgttgtatgtgttaaaactt 27420294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 27423172 - 27423114
Alignment:
Q  13 agaaaatgatgcccttctgatgataccagagaaacgaaaacccatttttgtatgtgtta 71  Q
    ||||||||| ||||||||||| |||||||||||||| | ||||||| ||||||||||||    
T  27423172 agaaaatgaggcccttctgataataccagagaaacggatacccattgttgtatgtgtta 27423114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 27415574 - 27415510
Alignment:
Q  13 agaaaatgatgcccttctgatgataccagagaaacgaaaacccatttttgtatgtgttagaactt 77  Q
    ||||||||||| | |||||||||||| || || ||||||||||||| |||||||||||| |||||    
T  27415574 agaaaatgatgactttctgatgatactagggacacgaaaacccattgttgtatgtgttaaaactt 27415510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 151 - 193
Target Start/End: Original strand, 27516920 - 27516962
Alignment:
Q  151 tgaatgatttgtgtttgtcctaaatgcttgcagccatgaatat 193  Q
    ||||||||||||||| || ||||||||||||||||||||||||    
T  27516920 tgaatgatttgtgttggtgctaaatgcttgcagccatgaatat 27516962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 153
Target Start/End: Original strand, 27563634 - 27563687
Alignment:
Q  100 acttgtaagcaagaagcaagtttttgaaattagaatggtttaggatgtgaatga 153  Q
    |||| ||||||| || ||||||||||||||| ||||| ||||||||||||||||    
T  27563634 acttttaagcaataaccaagtttttgaaatttgaatgctttaggatgtgaatga 27563687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 193
Target Start/End: Complemental strand, 27420249 - 27420176
Alignment:
Q  116 caagtttttgaaattagaatggtttaggatgtgaatgaatgatttgtgtttgtcctaaatgcttgcagccatgaatat 193  Q
    ||||||||||||||  ||||| |||||||||||||||     |||||||| |||||||||||||| |||| |||||||    
T  27420249 caagtttttgaaatctgaatgctttaggatgtgaatgt----tttgtgttggtcctaaatgcttgtagccttgaatat 27420176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 27444985 - 27445033
Alignment:
Q  23 gcccttctgatgataccagagaaacgaaaacccatttttgtatgtgtta 71  Q
    ||||||||||||||||| |  ||||||||||||||| ||||||||||||    
T  27444985 gcccttctgatgataccggttaaacgaaaacccattcttgtatgtgtta 27445033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 193
Target Start/End: Complemental strand, 27466643 - 27466601
Alignment:
Q  151 tgaatgatttgtgtttgtcctaaatgcttgcagccatgaatat 193  Q
    ||||||||||||||| || ||||| ||||||||||||||||||    
T  27466643 tgaatgatttgtgttggtgctaaaggcttgcagccatgaatat 27466601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 27498376 - 27498326
Alignment:
Q  20 gatgcccttctgatgataccagagaaacgaaaacccatttttgtatgtgtt 70  Q
    |||| ||||||||||||||| |  ||||||||||||||||| |||||||||    
T  27498376 gatgtccttctgatgatacctggtaaacgaaaacccattttcgtatgtgtt 27498326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 27526289 - 27526338
Alignment:
Q  18 atgatgcccttctgatgataccagagaaacgaaaacccatttttgtatgt 67  Q
    ||||||||||| ||||||||| ||  ||||||||||||||| ||||||||    
T  27526289 atgatgcccttttgatgatactaggtaaacgaaaacccattgttgtatgt 27526338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 193
Target Start/End: Complemental strand, 27415468 - 27415395
Alignment:
Q  116 caagtttttgaaattagaatggtttaggatgtgaatgaatgatttgtgtttgtcctaaatgcttgcagccatgaatat 193  Q
    |||||||||||||   ||||| |||||||||||||||     |||||||| |||||||||||||| |||| |||||||    
T  27415468 caagtttttgaaaactgaatgctttaggatgtgaatgt----tttgtgttggtcctaaatgcttgtagccttgaatat 27415395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 27501280 - 27501228
Alignment:
Q  18 atgatgcccttctgatgataccagagaaacgaaaacccatttttgtatgtgtt 70  Q
    |||||| |||||| | ||||||||  ||||||||||||||| |||||||||||    
T  27501280 atgatgtccttcttaggataccaggtaaacgaaaacccattcttgtatgtgtt 27501228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 27516786 - 27516838
Alignment:
Q  18 atgatgcccttctgatgataccagagaaacgaaaacccatttttgtatgtgtt 70  Q
    |||||| |||| ||||||||| ||  ||||||||||||||| |||||||||||    
T  27516786 atgatgaccttttgatgatactaggtaaacgaaaacccattgttgtatgtgtt 27516838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 27557442 - 27557394
Alignment:
Q  19 tgatgcccttctgatgataccagagaaacgaaaacccatttttgtatgt 67  Q
    ||||||||||||||||||| |||  ||||||||||||||| || |||||    
T  27557442 tgatgcccttctgatgataacaggtaaacgaaaacccattcttatatgt 27557394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University