View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17487_low_6 (Length: 539)
Name: NF17487_low_6
Description: NF17487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17487_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 8 - 522
Target Start/End: Complemental strand, 5906804 - 5906290
Alignment:
| Q |
8 |
ccaagaatatgtcaacactcataacaaaccttgccaaagtacgtgactattattgcataattgttgatcctgttttgttgacaaatattgaaaatgtttc |
107 |
Q |
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| T |
5906804 |
ccaaaaatatgtcaacactcataacaaaccttgccaaagtacgtgactattattgcataattgttgatcctgttttgttgacaaatattgaaaatgtttc |
5906705 |
T |
|
| Q |
108 |
taatgaacttaacatacccgttgcatttctttggatgcaaccttgtgctacattttctatttcttatcgttactttaggaatgttaattcatttcctgat |
207 |
Q |
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| T |
5906704 |
taatgaacttaacatacccgttgcatttctttggatgcaaccttgtgctacattttctatttcttatcgttactttaggaatgttaattcatttcctgat |
5906605 |
T |
|
| Q |
208 |
ttgaataaccctaatgagatagttcaattacctggacttcctttgcttaaggtaagagattttcctacttatatgcttccttcatttcctccacattgta |
307 |
Q |
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| T |
5906604 |
ttgaataaccctaatgagatagttcaattacctggacttcctttgctgaaggtaagagattttcctacttatatgcttccttcatttcctccacattgta |
5906505 |
T |
|
| Q |
308 |
gacaaattatggttgatatgtgtcaagcttgtgacactaatgtgaaatgggttatagctaatacattctatgaatgggaagtagagggtgtgaaatcaat |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5906504 |
gacaaattatggttgatatgtgtcaagcttgtgacactaatgtgaaatgggttatagctaatacagtctatgaatgggaagtagagggtgtgaaatcaat |
5906405 |
T |
|
| Q |
408 |
gtcctctttatctcccgtttacacagttggaccgttggtttcggattttatgattggaaaaaatgatgttagtaataataatatgattaacatgtggaat |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5906404 |
gtcctctttatctcccgtttacacagttggaccgttggtttcggattttatgatcggaaaaaatgatgttactaataataatatgattaacatgtggaat |
5906305 |
T |
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| Q |
508 |
gttgaagattcatgt |
522 |
Q |
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| T |
5906304 |
gttgaagattcatgt |
5906290 |
T |
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