View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17487_low_9 (Length: 435)
Name: NF17487_low_9
Description: NF17487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17487_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 36738164 - 36738580
Alignment:
| Q |
1 |
gctcaaacattaggttacgatgccataaaatgattaagaacatagagagaaacatatattttgtactaaatagactagagagtgacctaaacttgtgttt |
100 |
Q |
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| T |
36738164 |
gctcaaacattaggatacgatgccataaaatgattaagaacatagagagaaacatatattttgtactaaatagactagagagtgacctaaacttgtgttt |
36738263 |
T |
|
| Q |
101 |
aaaaggagaacccatctttaccttaaaatacaaacaaaaatattggggagttatttcattttttgggtgtgggataatgctttctatctaagcaaatcac |
200 |
Q |
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| T |
36738264 |
aaaaggagaacccatctttaccttaaaatacaaacaaaaatattggggagttatttcattttttgggtgtgggataatgctttctatctaagcaaatcac |
36738363 |
T |
|
| Q |
201 |
ttgaggtaaagtttgtctctttttctttaatgaaaataacttacattcaaaatttatctttttactattagactaaatcagaagttaggtacaattgact |
300 |
Q |
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| T |
36738364 |
ttgaggtaaagtttgtctctttttctttaatgaaaataacttacattcaaaatttatctttttactattagactaaatcagaagttaggtacaattgact |
36738463 |
T |
|
| Q |
301 |
ttattaatgtacaacaaaattcttcnnnnnnnnnnnnngtacaacaaaaataatttttattccatgctgctcttcatatgtatgtgtttgagaccattaa |
400 |
Q |
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| T |
36738464 |
ttattaatgtacaacaaaattcttc-aaaaagaaaaaagtacaacaaaaataatttttattccatgctgctcttcatatgtatgtgtttgagaccattaa |
36738562 |
T |
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| Q |
401 |
atcagttacgttgtttct |
418 |
Q |
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|||||||||||||||||| |
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| T |
36738563 |
atcagttacgttgtttct |
36738580 |
T |
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