View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17488_high_14 (Length: 250)
Name: NF17488_high_14
Description: NF17488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17488_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 7879658 - 7879887
Alignment:
| Q |
1 |
ctttatgtggaaagtatatatgcaagctgtcaactaaaagcttttcaatgaagagaatgcaataatagttgcactgtctgtaaaagttatattggtagaa |
100 |
Q |
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| T |
7879658 |
ctttatgtggaaagtatatatgcaagctgtcaactaaaagcttttcaatgaagagaatgcaagaatagttgcactgtctgtaaaagttatgttggtagaa |
7879757 |
T |
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| Q |
101 |
ggtctatatctttgttcatacgggtttgcatttgtctataatagttgttatattggttttcaaataagtgctatattgtcattttgctactatatagact |
200 |
Q |
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| T |
7879758 |
ggtctataactttgttcatacgggtttgcatttgtctataatagttgttatattggttttcaaataagtgctatattgtcattttgctactatatagact |
7879857 |
T |
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| Q |
201 |
attccatatctgtatgtactatagttttaa |
230 |
Q |
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| T |
7879858 |
attccatatctgtatgtactatagttttaa |
7879887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 147
Target Start/End: Original strand, 7911281 - 7911347
Alignment:
| Q |
81 |
taaaagttatattggtagaaggtctatatctttgttcatacgggtttgcatttgtctataatagttg |
147 |
Q |
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||||||||| |||||||| |||||||| |||||||||||||| |||| |||||||||||||||||| |
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| T |
7911281 |
taaaagttactttggtagacggtctatagctttgttcatacggatttgaatttgtctataatagttg |
7911347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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