View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17488_high_15 (Length: 249)
Name: NF17488_high_15
Description: NF17488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17488_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 27581703 - 27581944
Alignment:
| Q |
1 |
caatgattctattgttgatcggcacagcaaatattaagactccagtaaggtcacttgctcattgcatgttgagtgatgcagcggagtttgggtaaaatgt |
100 |
Q |
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|||||||||||||||||||||| || ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
27581703 |
caatgattctattgttgatcggtgtagaaaatattaagactccagtatggtcacttgctcgttgcatgttgagtgatgcagcggagtttgggtaaaatgt |
27581802 |
T |
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| Q |
101 |
tcaaaatttctaaccctagagtttggttggtataaatatctgcggaacgtatcagctgagaacaaatacttaatgtgagaaacgagcattaagtattagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||| |||||||||||||||||||||||||||||| |
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| T |
27581803 |
tcaaaatttctaaccctagagtttggttggtataaatatccgcggaacgtatcaggcgagaactaatatgtaatgtgagaaacgagcattaagtattagt |
27581902 |
T |
|
| Q |
201 |
tccaaaactctttcaatgttttatatttaatctacctatgct |
242 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27581903 |
tccaaaactctttcaatgttttatatttaatctacctctgct |
27581944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 27582902 - 27582716
Alignment:
| Q |
1 |
caatgattctattgttgatcggcacagcaaatattaagactccagt--aaggtcacttgctcattgcatgttgagtgatgcagcggagtttgggtaaaat |
98 |
Q |
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|||||||| |||||||||||||| |||||||||||||||||||| |||||||| ||||| |||||||||||||||||| | |||||||||||| ||| |
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| T |
27582902 |
caatgattttattgttgatcggcgtagcaaatattaagactccagggaaaggtcacatgctcgttgcatgttgagtgatgcggtggagtttgggtagaat |
27582803 |
T |
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| Q |
99 |
gttcaaaatttctaaccctagagtttggttggtataaatatctgcggaacgtatcagctgagaacaaatacttaatgtgagaaacga |
185 |
Q |
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| T |
27582802 |
gttcaaaattcctaaccctagagtttggttggtataaatatctgcgaaacgtatcaggtgagaactaatacttaatgtgaaaaacga |
27582716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 27543577 - 27543393
Alignment:
| Q |
1 |
caatgattctattgttgatcggcacagcaaatattaagactccagtaaggtcacttgctcattgcatgttgagtgatgcagcggagtttgggtaaaatgt |
100 |
Q |
| |
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|||||||| |||||||||| ||| |||||||||||||||||| | ||||| |||||||| ||||||||||||||||| |||||||||||||| ||||| |
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| T |
27543577 |
caatgattttattgttgattggcgtagcaaatattaagactccgggaaggttacttgctcgttgcatgttgagtgatgtggcggagtttgggtagaatgt |
27543478 |
T |
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| Q |
101 |
tcaaaatttctaaccctagagtttggttggtataaatatctgcggaacgtatcagctgagaacaaatacttaatgtgagaaacga |
185 |
Q |
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| T |
27543477 |
ttaaaattcctaaccctagagtttggttggtataaatatccacggaacgtattaggtgtgaactaatacttaatgttagaaacga |
27543393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 47 - 186
Target Start/End: Complemental strand, 34992740 - 34992600
Alignment:
| Q |
47 |
aaggtcacttgctcattgcatgttgagtgatgcagcggagtttgggtaaaatgttcaaaatttctaaccctagagtttggttggtataaatatct-gcgg |
145 |
Q |
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|||||||||||||| |||||||||||||||||| || ||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||| | || |
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| T |
34992740 |
aaggtcacttgctcgttgcatgttgagtgatgcggcagagtttgggtagaatgttcaaaattcctaaccctagagttttgttggtataaatatttaaggg |
34992641 |
T |
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| Q |
146 |
aacgtatcagctgagaacaaatacttaatgtgagaaacgag |
186 |
Q |
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| T |
34992640 |
agcgtataaggtgagaactaacacttaatgtgagaaacgag |
34992600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 34980385 - 34980271
Alignment:
| Q |
1 |
caatgattctattgttgatcggcacagcaaatattaagactccagtaaggtcacttgctcattgcatgttgagtgatgcagcggagtttgggtaaaatgt |
100 |
Q |
| |
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|||||||| ||||||| ||| | ||||||||||| |||||| ||| |||||||||| |||||||||||||||||| |||| ||||||||| ||||| |
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| T |
34980385 |
caatgattttattgttaatcagtgcagcaaatattg---ctccaggaagctcacttgctcgttgcatgttgagtgatgcggcggtgtttgggtacaatgt |
34980289 |
T |
|
| Q |
101 |
tcaaaatttctaacccta |
118 |
Q |
| |
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|||||||| |||||||| |
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| T |
34980288 |
tcaaaattcataacccta |
34980271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 122
Target Start/End: Complemental strand, 34984815 - 34984725
Alignment:
| Q |
29 |
aaatattaagactccagtaaggtcacttgctcattgcatgttgagtgatgcagcggagtttgggtaaaatgttcaaaatttctaaccctagagt |
122 |
Q |
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||||||| ||||| ||| |||||||||||||| |||||||||||| ||||| | ||||||||| ||||||||||||| ||||||||||||| |
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| T |
34984815 |
aaatattgagactgcaggaaggtcacttgctcgttgcatgttgagggatgc---gatgtttgggtagaatgttcaaaattcctaaccctagagt |
34984725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 237
Target Start/End: Complemental strand, 27543393 - 27543321
Alignment:
| Q |
165 |
aatacttaatgtgagaaacgagcattaagtattagttccaaaactctttcaatgttttatatttaatctacct |
237 |
Q |
| |
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||||||||||||||||||||| ||||| |||||||||||||||||||| || ||||||||||||||||| |
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| T |
27543393 |
aatacttaatgtgagaaacgatcattacgtattagttccaaaactcttcaaaaaaattatatttaatctacct |
27543321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 27542814 - 27542906
Alignment:
| Q |
1 |
caatgattctattgttgatcggcacagcaaatattaagactccagtaaggtcacttgctcattgcatgttgagtgatgcagcggagtttgggt |
93 |
Q |
| |
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|||||||| |||| || |||||| || |||||| |||||||| || || |||||||| |||||||| |||||||||| |||||||||||| |
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| T |
27542814 |
caatgattttattttttatcggcgtagaaaatatcgagactccaagaaagttacttgctcgttgcatgtcgagtgatgcatcggagtttgggt |
27542906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 202
Target Start/End: Original strand, 27582423 - 27582457
Alignment:
| Q |
168 |
acttaatgtgagaaacgagcattaagtattagttc |
202 |
Q |
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|||||||||||||||| |||||||||||||||||| |
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| T |
27582423 |
acttaatgtgagaaacaagcattaagtattagttc |
27582457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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