View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17488_high_17 (Length: 238)
Name: NF17488_high_17
Description: NF17488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17488_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 104 - 222
Target Start/End: Original strand, 48708086 - 48708204
Alignment:
| Q |
104 |
cattgtatcctagaagataatcattaatggatgtatgataggtttaatttgtttatggaagctctgaagcattcttttataaagtaaaagggaaaagtaa |
203 |
Q |
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| T |
48708086 |
cattgtatcctagaagatgatcattaatggatgtatgataggtttaatttgtttatggaagctctgaagcattcttttataaagtaaaagggaaaagtaa |
48708185 |
T |
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| Q |
204 |
cacatgaagactaatctct |
222 |
Q |
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| T |
48708186 |
cacatgaagactaatctct |
48708204 |
T |
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Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 9 - 108
Target Start/End: Original strand, 48707962 - 48708061
Alignment:
| Q |
9 |
gagagtgtacattctgaatggataagtattcgagattgtttatattattactaaatgtttttaatgtgtcccttttaggagtaattttcaagtttcattg |
108 |
Q |
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| T |
48707962 |
gagagtgtacattctgaatggataagtattcgagattgtttatattattactaaatgtttttaatgtgtcccttttaggagtaattttcaagtttcattg |
48708061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 105 - 216
Target Start/End: Original strand, 12957950 - 12958057
Alignment:
| Q |
105 |
attgtatcctagaagataatcattaatggatgtatgataggtttaatttgtttatggaagctctgaagcattcttttataaagtaaaagggaaaagtaac |
204 |
Q |
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| T |
12957950 |
attgtatcctagaagatgatctttga---atgtatgataggttcaatttgtttttggaagctctgaagcattcttttttaaagtaaaaggg-aaagtagc |
12958045 |
T |
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| Q |
205 |
acatgaagacta |
216 |
Q |
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| T |
12958046 |
acatgaagacta |
12958057 |
T |
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