View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17488_high_3 (Length: 555)
Name: NF17488_high_3
Description: NF17488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17488_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 1 - 540
Target Start/End: Original strand, 21180636 - 21181171
Alignment:
| Q |
1 |
ggtgaagatgcaaagtgctttgaatgtaaaacatttgactctaaagactaaaatgcattcatatgagctttgtggatttgaattcatgctcaacagttgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21180636 |
ggtgaagatgcaaagtgctttgaatgtaaaacatttgactctaaagactaaaatgcattcatatgagctttgtggatttgaattcatgctcaacagttgc |
21180735 |
T |
|
| Q |
101 |
ccattgcttgaaaaactcacattggacataagttcacagcttatatttgaggtcagtcaaatacttttacatttttctctctcaatataatttaacattg |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||| |
|
|
| T |
21180736 |
ccattgcttgaaaaactcatattggacataagtccacaacttatatttgaggtcagtcaaatacttt-acatttctctctctcaatac---ttaacattg |
21180831 |
T |
|
| Q |
201 |
taatcattgatatggtttgattttttatacttttgaatgattggttgtatatattacaggactatacacttccctatcaagtagaccttaagaaattttg |
300 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21180832 |
taatcattgatatggtttgatttttaatacttttgaatgattggttgtatatattacaggactatacacttccctatcaagtagaccttaagaaattttg |
21180931 |
T |
|
| Q |
301 |
gcaaactcgtcgagtgtttcctgaatgcttgaaatatagtttgaaggtggtagaagtaattggattgagaggcacaaacgaagaacttatgacttgttgc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
21180932 |
gcaaactcgtcgagtgtttcctgaatgcttgaaaaatagtttgaaggtggtagaagtaattggattgagagccacaaacgaagaacttatgacttgttgc |
21181031 |
T |
|
| Q |
401 |
tttcttatgcaaggaaaagttttggaacagattaatattaagttgtggaatgaagatgatggtaaagaagattttcgacgtggatctgcacaacttttaa |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
21181032 |
tttcttatgcaaggaaaagttttggaacagattaatattaagttgtggaatgaagatgatggtaaagaagaatttcgacgtggatctgcacaacttttag |
21181131 |
T |
|
| Q |
501 |
tcaaagctcaaaagggttcaaagaatttgcaaatatcaat |
540 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21181132 |
tcaaagctcaaaagggttcaaagaatttgcaaatatcaat |
21181171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 210 - 540
Target Start/End: Complemental strand, 40994072 - 40993745
Alignment:
| Q |
210 |
atatggtttgattttttatacttttgaatgattggttgtatatattacaggactatacacttccctatcaagtagaccttaagaaattttggcaaactcg |
309 |
Q |
| |
|
|||||||||||||||| | ||||||||||| ||||||||||||||||||||||||| |||||||||| | ||||||| || |||||||||||| || |
|
|
| T |
40994072 |
atatggtttgatttttaacacttttgaatgtttggttgtatatattacaggactatggacttccctattatagagaccttgcgagattttggcaaacgcg |
40993973 |
T |
|
| Q |
310 |
tcgagtgtttcctgaatgcttgaaatatagtttgaaggtggtagaagtaattggattgagaggcacaaacgaagaacttatgacttgttgctttcttatg |
409 |
Q |
| |
|
||||||||||||| |||||||| || ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40993972 |
tcgagtgtttcctcaatgcttgcaaaatactttgaaggtggtagaagtaattggattgagagccacaaacgaagaacttatgacttgttgctttcttatg |
40993873 |
T |
|
| Q |
410 |
caaggaaaagttttggaacagattaatattaagttgtggaatgaagatgatggtaaagaagattttcgacgtggatctgcacaacttttaatcaaagctc |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| || | || | ||| | |||| ||||||||||||| |||| |||| |
|
|
| T |
40993872 |
caaggaaaagttttggaacagattaatattaagttgtggaatgaa---gatggaaaggtggaatatcgccatggacgtgcacaacttttagtcaatgctc |
40993776 |
T |
|
| Q |
510 |
aaaagggttcaaagaatttgcaaatatcaat |
540 |
Q |
| |
|
|||| ||||||||||||||| ||||||||| |
|
|
| T |
40993775 |
caaagcgttcaaagaatttgcgaatatcaat |
40993745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 213 - 458
Target Start/End: Complemental strand, 40986309 - 40986064
Alignment:
| Q |
213 |
tggtttgattttttatacttttgaatgattggttgtatatattacaggactatacacttccctatcaagtagaccttaagaaattttggcaaactcgtcg |
312 |
Q |
| |
|
||||||||||||| | ||||||||||| || | ||||| |||||||||||||| ||||||||||| ||||||| |||||||||||||||| ||||| |
|
|
| T |
40986309 |
tggtttgatttttaacacttttgaatgttttctcgtatacattacaggactatagacttccctatcttacagaccttgagaaattttggcaaacgcgtcg |
40986210 |
T |
|
| Q |
313 |
agtgtttcctgaatgcttgaaatatagtttgaaggtggtagaagtaattggattgagaggcacaaacgaagaacttatgacttgttgctttcttatgcaa |
412 |
Q |
| |
|
||||||| || |||||||| || ||| ||||||| || ||||| || |||||| ||||| ||||||| ||||||||| ||||||||||||||| ||| || |
|
|
| T |
40986209 |
agtgtttgctcaatgcttgcaaaatactttgaagatgatagaaatatttggatcgagagccacaaaccaagaacttaggacttgttgctttctaatgaaa |
40986110 |
T |
|
| Q |
413 |
ggaaaagttttggaacagattaatattaagttgtggaatgaagatg |
458 |
Q |
| |
|
|| |||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40986109 |
gggaaagctttggaacagattaatattaagttgtcgaatgaagatg |
40986064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 7 - 167
Target Start/End: Complemental strand, 40994297 - 40994137
Alignment:
| Q |
7 |
gatgcaaagtgctttgaatgtaaaacatttgactctaaagactaaaatgcattcatatgagctttgtggatttgaattcatgctcaacagttgcccattg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
40994297 |
gatgcaaagtgctttgaatgtaaaacatttgattctaaagactcaaatgcatccatatgagctttgtggaattgaattcttgctcaacagttgcccattg |
40994198 |
T |
|
| Q |
107 |
cttgaaaaactcacattggacataagttcacagcttatatttgaggtcagtcaaatacttt |
167 |
Q |
| |
|
||||||||||| ||||||||||||||| |||| ||||||||||||| ||| ||||||||| |
|
|
| T |
40994197 |
cttgaaaaacttacattggacataagtccacaagttatatttgaggtgagtaaaatacttt |
40994137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 229 - 455
Target Start/End: Complemental strand, 40989669 - 40989433
Alignment:
| Q |
229 |
acttttgaatgattggttgtatatattacaggac----tatacacttccctatcaagtagaccttaagaaattttggcaaactcgtcgagtgtttcctga |
324 |
Q |
| |
|
||||||||||| ||| | |||||||||| ||||| ||||||||||| ||||| || |||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
40989669 |
acttttgaatgtttgctcgtatatattagaggaccatatatacacttccatatcatgttgaccttaagaaattttggcaaactcgtcgagtgttttctca |
40989570 |
T |
|
| Q |
325 |
atgcttgaaatatagtttgaaggtggtagaagtaattggattgagaggcacaaacgaagaacttatgacttgttgctttcttatgcaaggaaaagttttg |
424 |
Q |
| |
|
||||||| || ||| ||||||||||||||||||||| |||||||||| |||| ||||| ||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
40989569 |
atgcttgcaaaatactttgaaggtggtagaagtaataggattgagagccacagacgaataacttataacttgttgctttcttatgcaaggaatttttttg |
40989470 |
T |
|
| Q |
425 |
gaacagatta------atattaagttgtggaatgaag |
455 |
Q |
| |
|
||||| |||| ||||||||||||||||||||| |
|
|
| T |
40989469 |
gaacatattattaattatattaagttgtggaatgaag |
40989433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 19 - 174
Target Start/End: Complemental strand, 40986521 - 40986366
Alignment:
| Q |
19 |
tttgaatgtaaaacatttgactctaaagactaaaatgcattcatatgagctttgtggatttgaattcatgctcaacagttgcccattgcttgaaaaactc |
118 |
Q |
| |
|
||||||||||| |||||||| |||||| || |||||||| ||||||||||||||||||||||||| |||| ||||||||||| ||||| ||||||||| |
|
|
| T |
40986521 |
tttgaatgtaagacatttgattctaaaaacacaaatgcataaatatgagctttgtggatttgaattcttgcttaacagttgcccgttgctagaaaaactc |
40986422 |
T |
|
| Q |
119 |
acattggacataagttcacagcttatatttgaggtcagtcaaatacttttacattt |
174 |
Q |
| |
|
||||||||||||||| ||| |||||||| |||| |||||||||| |||||||| |
|
|
| T |
40986421 |
acattggacataagtcaacaagttatatttaaggtgagtcaaataccgttacattt |
40986366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University