View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17488_high_9 (Length: 351)
Name: NF17488_high_9
Description: NF17488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17488_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 4 - 341
Target Start/End: Complemental strand, 45253687 - 45253350
Alignment:
| Q |
4 |
acttgttcagaattagcaacagaactagtatcattatggttgttgttatgatcagtctcaggtttaggttgatagaaaagtttcctagaacaattagggt |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45253687 |
acttgttcagaattagcaacagaactagtatcattattgttgttgttatgatcagtctcaggtttaggttgatagaaaagtttcctagaacaattagggt |
45253588 |
T |
|
| Q |
104 |
ttggttcagttaagaaaggaggaccaccagcaatgagtgtaggccattgccaaacgattttcgccgcagcggtaagaggtttagaagcacaaaaaggttg |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45253587 |
ttggttcagttaagaaaggaggaccaccagcaatgagtgtaggccattgccaaacgattttcgccgcagcggtaagaggtttagaagcacaaaaaggttg |
45253488 |
T |
|
| Q |
204 |
agcaagaagaatgttataccttctcatacgaagttgatgaagagcgtttgagaaatctctatcaccagaaattaacaaatagttagcaggtgcagggtta |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45253487 |
agcaagaagaatgttataccttctcatacgaagttgatgaagagcgtttgagaaatctctatcaccagaaattaacaaatagttagcaggtgcagggtta |
45253388 |
T |
|
| Q |
304 |
tcaatagcccatagcaacatatcaacaagtatcttctt |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45253387 |
tcaatagcccatagcaacatatcaacaagtatcttctt |
45253350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 302
Target Start/End: Original strand, 45800155 - 45800259
Alignment:
| Q |
198 |
aggttgagcaagaagaatgttataccttctcatacgaagttgatgaagagcgtttgagaaatctctatcaccagaaattaacaaatagttagcaggtgca |
297 |
Q |
| |
|
|||||| || |||||||| |||||||| ||||| || |||||||| || || || |||||||||| |||||| ||||| || ||||| || ||||||||| |
|
|
| T |
45800155 |
aggttgtgcgagaagaatattatacctcctcattcgcagttgatggagggcattagagaaatctcgatcacccgaaatcaataaataattcgcaggtgca |
45800254 |
T |
|
| Q |
298 |
gggtt |
302 |
Q |
| |
|
||||| |
|
|
| T |
45800255 |
gggtt |
45800259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University