View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17488_low_1 (Length: 1098)
Name: NF17488_low_1
Description: NF17488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17488_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 1025; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 1025; E-Value: 0
Query Start/End: Original strand, 15 - 1081
Target Start/End: Original strand, 43017059 - 43018121
Alignment:
| Q |
15 |
cacagacaacggacacaacaaagacactaacatgttgaaacaattaattctacacctgcataatcgagttcatctcctctaaatgtgaaacaaaacatgg |
114 |
Q |
| |
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| T |
43017059 |
cacagacaacggacacaacaaagacactaacatgttgaaacaattaattctacacctgcataatcgagttcatctcctctaaatgtgaaacaaaacatgg |
43017158 |
T |
|
| Q |
115 |
actaattaatacttccgatgattaaatatatgattggggaggtctaccaaaacaacattgaccttatcaccttgaaatcctcgttccactactctttaaa |
214 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43017159 |
actaat----acttccgatgattaaatatatgattggggaggtctaccaaaacaacattgaccttatcaccttgaaatcctcgttccactactctttaaa |
43017254 |
T |
|
| Q |
215 |
ccctacaaactttaccctcccaatcctcgctccacctttgaaaacaagaataagagagtgatcaagtaaacttatttgaatagtgttgaagaatttaagt |
314 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43017255 |
ccctacaaactttaccctcccaatcctcgctccacctttgaaaacaagaataagagagtgatcaagtaaacttatttgaatagtgttgaagaatttaagt |
43017354 |
T |
|
| Q |
315 |
aaacattcaaaataataaatcatcacataaacctgagattacataacaagtcgaatttatctcagaggtcacaggagatgtaaccaagaatagaagaaaa |
414 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43017355 |
aaacattcaaaataataaatcatcacataaacctgagattacataacaagtcgaatttatctcagaggtcacaggagatgtaaccaagaatagaagaaaa |
43017454 |
T |
|
| Q |
415 |
ttggaagaggaaatggttttcttgtttgttgcttatatatcatttttgtgttttgcatgcacaattcagcttttgaatgagtcacatatagggcaagact |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43017455 |
ttggaagaggaaatggttttcttgtttgttgcttatatatcatttttgtgttttgcatgcacaattcagcttttgaatgagtcacatatagggcaagact |
43017554 |
T |
|
| Q |
515 |
tattctaatattttatgaaaaattcagcttttgaaagagtcacttgcataaaacccgtttatcaggtgagaaaaataaggcaaggcctgtaaattttggg |
614 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43017555 |
tattctaatattttatgaaaaattcagcttttgaaagagtcacttgcataaaacccgtttatcaggtgagaaaaataaggcaaggcctgtaaattttggg |
43017654 |
T |
|
| Q |
615 |
aaaaattaaacgttaaagaaaattatttttggatagccttgatttttattaacttttgaaataaaataactctaaattcacaacattaagatcatagtat |
714 |
Q |
| |
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| T |
43017655 |
aaaaattaaacgttaaagaaaattatttttggatagccttgatttttattaacttttgaaataaaataactctaaattcacaacattaagatcatagtat |
43017754 |
T |
|
| Q |
715 |
aaacataactttgtgctataattccaaacagaatatttcannnnnnncggcctataattcataatagattattttttatactaaaaagaaaatcataata |
814 |
Q |
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| T |
43017755 |
aaacataactttgtgctataattccaaacagaatatttcattttttttggcctataattcataatagattattttttatactaaaaagaaaatcataata |
43017854 |
T |
|
| Q |
815 |
gattattttgtcacattcatattctctaatacacatggtttgtgtatgcatgtttcacgtgaccaatactttaggaaaatatatatagtagtgagtaatt |
914 |
Q |
| |
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| T |
43017855 |
gattattttgtcacattcatattctctaatacacatggtttgtgtatgcatgtttcacgtgaccaatactttaggaaaatatatatagtagtgagtaatt |
43017954 |
T |
|
| Q |
915 |
ccgatagtagattggtcgggaatataggaaaatatagtaatgagtggaagggatataagaaaatatgtttcctatgtttcacgtaaccaatactttagga |
1014 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43017955 |
ccgatagtagattggtcgggaatataggaaaatatagtaatgagtggaagggatataagaaaatatgtttcctatgtttcacgtaaccaatactttagga |
43018054 |
T |
|
| Q |
1015 |
aaatatagtagtgagtaattccgaagtagattgtggggcagccagttgagttaattatgggactggt |
1081 |
Q |
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| T |
43018055 |
aaatatagtagtgagtaattccgaagtagattgtggggcagccagttgagttaattatgggactggt |
43018121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 500 - 789
Target Start/End: Original strand, 35057433 - 35057706
Alignment:
| Q |
500 |
atatagggcaagacttattctaatattttatgaaaaattcagcttttgaaagagtcacttgcataaaacccgtttatcaggtgagaaaaataaggcaagg |
599 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||| |
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| T |
35057433 |
atatagggcaagacatattctaatattttatgaaaaattcagcttttgaaagagtcacttgcataaaaaccgtttatgaggtgaaaaaaataaggcaagg |
35057532 |
T |
|
| Q |
600 |
cctgtaaattttgggaaaaattaaacgttaaagaaaattatttttggatagccttga-tttttattaacttttgaaataaaataactctaaattcacaac |
698 |
Q |
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| ||||||||||||| || | |||||||||| || || | ||||||||||| |||||||||||||||||||||| |||| || |
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| T |
35057533 |
tcagtaaattttggga-----------------aacttcatttttggatggcgttaattttttattaacatttgaaataaaataactctaaaatcacgac |
35057615 |
T |
|
| Q |
699 |
attaagatcatagtataaacataactttgtgctataattccaaacagaatatttcannnnnnncggcctataattcataatagattatttt |
789 |
Q |
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||||||||||||||| ||||| |||||||||||||||||||| | | ||||||||| |||||||||||||||||||||||||||| |
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| T |
35057616 |
attaagatcatagtaaaaacagaactttgtgctataattccagatataatatttcatttttttcggcctataattcataatagattatttt |
35057706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 315 - 442
Target Start/End: Original strand, 35057106 - 35057230
Alignment:
| Q |
315 |
aaacattcaaaataataaatcatcacataaacctgagattacataacaagtcgaatttatctcagaggtcacaggagatgtaaccaagaatagaagaaaa |
414 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||| |||| |||| |||||||||||||||||| |||||| |
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| T |
35057106 |
aaacattcaaaataataaatcatcacataaacctgagattacagaacaaatcaaatttatcttagagatcactggagatgtaaccaagaat---agaaaa |
35057202 |
T |
|
| Q |
415 |
ttggaagaggaaatggttttcttgtttg |
442 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
35057203 |
ttggaagaggaaatggttttcttgtttg |
35057230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 252 - 311
Target Start/End: Original strand, 35056999 - 35057058
Alignment:
| Q |
252 |
ttgaaaacaagaataagagagtgatcaagtaaacttatttgaatagtgttgaagaattta |
311 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
35056999 |
ttgaaaacaaaaataagagagagatcaagtaaacttatttgaatagtgttgaataattta |
35057058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 927 - 978
Target Start/End: Original strand, 43018118 - 43018169
Alignment:
| Q |
927 |
tggtcgggaatataggaaaatatagtaatgagtggaagggatataagaaaat |
978 |
Q |
| |
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|||| |||||||||||||||||||| | |||||||| ||||||||||||||| |
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| T |
43018118 |
tggtagggaatataggaaaatatagaagtgagtggaggggatataagaaaat |
43018169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 639 - 690
Target Start/End: Original strand, 38569757 - 38569809
Alignment:
| Q |
639 |
atttttggatagccttgattttt-attaacttttgaaataaaataactctaaa |
690 |
Q |
| |
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|||||||||||||||| ||||| | ||||||||||||||||||||||||||| |
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| T |
38569757 |
atttttggatagccttatttttttactaacttttgaaataaaataactctaaa |
38569809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 530 - 620
Target Start/End: Complemental strand, 14328987 - 14328897
Alignment:
| Q |
530 |
tgaaaaattcagcttttgaaagagtcacttgcataaaacccgtttatcaggtgagaaaaataaggcaaggcctgtaaattttgggaaaaat |
620 |
Q |
| |
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|||||||||| | ||||||| |||||||||||||||| | |||| | |||| |||||||| |||||||| ||||| ||||| |||||| |
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| T |
14328987 |
tgaaaaattctgattttgaataagtcacttgcataaaaactgttttttaggtcagaaaaatgaggcaaggttagtaaactttggaaaaaat |
14328897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 530 - 620
Target Start/End: Complemental strand, 14421997 - 14421907
Alignment:
| Q |
530 |
tgaaaaattcagcttttgaaagagtcacttgcataaaacccgtttatcaggtgagaaaaataaggcaaggcctgtaaattttgggaaaaat |
620 |
Q |
| |
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|||||||||| | ||||||| |||||||||||||||| | |||| | |||| |||||||| |||||||| ||||| ||||| |||||| |
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| T |
14421997 |
tgaaaaattctgattttgaataagtcacttgcataaaaactgttttttaggtcagaaaaatgaggcaaggttagtaaactttggaaaaaat |
14421907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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