View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17488_low_12 (Length: 324)

Name: NF17488_low_12
Description: NF17488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17488_low_12
NF17488_low_12
[»] chr6 (4 HSPs)
chr6 (50-313)||(19305851-19306118)
chr6 (50-313)||(10122332-10122606)
chr6 (50-119)||(10126551-10126620)
chr6 (65-119)||(19310337-19310391)
[»] chr1 (12 HSPs)
chr1 (50-313)||(28244199-28244474)
chr1 (50-313)||(11476560-11476853)
chr1 (50-119)||(11318763-11318832)
chr1 (50-119)||(11471322-11471391)
chr1 (50-119)||(17430769-17430839)
chr1 (65-119)||(17431703-17431757)
chr1 (50-119)||(50017608-50017677)
chr1 (211-312)||(17431502-17431601)
chr1 (218-273)||(11318579-11318633)
chr1 (65-112)||(50027519-50027566)
chr1 (209-262)||(50017778-50017830)
chr1 (161-201)||(11318671-11318711)
[»] chr7 (4 HSPs)
chr7 (50-313)||(22489252-22489527)
chr7 (54-119)||(22492408-22492473)
chr7 (50-119)||(48944292-48944361)
chr7 (74-118)||(48072491-48072535)
[»] chr2 (6 HSPs)
chr2 (50-118)||(43159350-43159418)
chr2 (50-119)||(38250105-38250174)
chr2 (50-119)||(38255469-38255538)
chr2 (50-118)||(43154102-43154170)
chr2 (218-313)||(38250304-38250404)
chr2 (218-313)||(43159121-43159221)
[»] chr5 (7 HSPs)
chr5 (50-251)||(25383924-25384134)
chr5 (58-119)||(25482726-25482787)
chr5 (50-119)||(25379448-25379517)
chr5 (72-119)||(25484266-25484313)
chr5 (72-118)||(10292976-10293022)
chr5 (276-313)||(25383881-25383918)
chr5 (50-113)||(23231600-23231664)
[»] chr4 (5 HSPs)
chr4 (50-119)||(28167592-28167662)
chr4 (54-119)||(54362234-54362300)
chr4 (50-111)||(48792819-48792880)
chr4 (52-119)||(28166913-28166981)
chr4 (74-114)||(48796046-48796086)
[»] chr3 (2 HSPs)
chr3 (211-309)||(33862946-33863043)
chr3 (66-119)||(33862375-33862428)


Alignment Details
Target: chr6 (Bit Score: 143; Significance: 4e-75; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 50 - 313
Target Start/End: Original strand, 19305851 - 19306118
Alignment:
Q  50 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacacccttttnnnnnnnnnnntttaattaaatgagaataa 149  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||            | ||||||| ||||||||    
T  19305851 tgtgtaacattgggtattttaagttatataacattgtccaatcagggtgtgccacgtggcacacccttttttaaaaaaaaaatcaattaaaggagaataa 19305950  T
Q  150 gagaacacgat----agaaca-gtgaaaactcaaaaacccattcctcttctcttctctcctacgatgaacccaccacccaccttcaacttttctctcgcc 244  Q
    ||||||  ||     |||||| ||||||| | |||||| ||||||||||||||||||   ||||| |||||||||||||||| |||||||||||| ||||    
T  19305951 gagaacgtgactaagagaacaagtgaaaaataaaaaacgcattcctcttctcttctcctgtacgacgaacccaccacccaccatcaacttttctc-cgcc 19306049  T
Q  245 accgccgacacttccctccgccgccgccgtcctctccgccaacgaccaccgttcctcttcactttctct 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19306050 accgccgacacttccctccgccgccgccgtcctctccgccaacgaccaccgttcctcttcactttctct 19306118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 50 - 313
Target Start/End: Original strand, 10122332 - 10122606
Alignment:
Q  50 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacacccttttnnnnnnnnnnntttaattaaatgagaataa 149  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||            | ||||||| ||||||||    
T  10122332 tgtgtaacattgggtattttatgttatataacattgtccaatcagggtgtgccacgtggcacaccctttttaaaaaaaaaaatcaattaaaggagaataa 10122431  T
Q  150 gaga--acacg------atagaacagtgaaaactcaaaaacccattcctcttctcttctctcctacgatgaacccaccacccacct----tcaacttttc 237  Q
    ||||  |||||      | |||| |||||||| |||||||| ||||||||||| ||||||   ||||| ||||||||||||||||     ||||||||||    
T  10122432 gagagaacacgtgactgagagaagagtgaaaaatcaaaaacgcattcctcttcacttctccagtacgacgaacccaccacccacccaccatcaacttttc 10122531  T
Q  238 tctcgccaccgccgacacttccctccgccgccgccgtcctctccgccaacgaccaccgttcctcttcactttctct 313  Q
    || ||||||||||||||||| ||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||    
T  10122532 tc-cgccaccgccgacacttacctccgccgtcgccgtcctctccgccaacggccatcgttcctcttcactttctct 10122606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 10126620 - 10126551
Alignment:
Q  50 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccctttt 119  Q
    |||||||||| | | |||||| |||||||||||||| ||||| |||||||||||||||||||||||||||    
T  10126620 tgtgtaacatagtggattttatgttatataacattgtccaataagggtgtgccacgtggcacaccctttt 10126551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 119
Target Start/End: Complemental strand, 19310391 - 19310337
Alignment:
Q  65 attttaagttatataacattgcccaatcagggtgtgccacgtggcacaccctttt 119  Q
    |||||| |||||||||||||| ||||| ||| |||||||||||||||||| ||||    
T  19310391 attttatgttatataacattgtccaataaggatgtgccacgtggcacaccttttt 19310337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 50 - 313
Target Start/End: Original strand, 28244199 - 28244474
Alignment:
Q  50 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgt--ggcacacccttttnnnnnnnnnnntttaattaaatgagaat 147  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||           |  ||||||| ||||||    
T  28244199 tgtgtaacattgggtattttaagttatataacattgtccaatcagggtgtgccacgtatggcacaccctttttaaaaaaaaaatc-aattaaaggagaat 28244297  T
Q  148 aagaga--acacg------atagaacagtgaaaactcaaaaacccattcctcttctcttctctcctacgatgaacccaccacccacct----tcaacttt 235  Q
    ||||||  |||||      | |||| |||||||| |||||||| ||||||||||||||||||   ||||| ||||||||||||||||     ||||||||    
T  28244298 aagagagaacacgtgactgagagaagagtgaaaaatcaaaaacgcattcctcttctcttctccagtacgacgaacccaccacccacccaccatcaacttt 28244397  T
Q  236 tctctcgccaccgccgacacttccctccgccgccgccgtcctctccgccaacgaccaccgttcctcttcactttctct 313  Q
    |||| |||||||||||||||||||||||| |||||| |||||||||||||||| ||| ||||||||||||||||||||    
T  28244398 tctc-cgccaccgccgacacttccctccgtcgccgctgtcctctccgccaacggccatcgttcctcttcactttctct 28244474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 50 - 313
Target Start/End: Complemental strand, 11476853 - 11476560
Alignment:
Q  50 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccctttt--nnnnnnnnnnntttaattaaatgagaat 147  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||             || ||||||| ||||||    
T  11476853 tgtgtaacattgggtattttaagttatataacattgtccaatcagggtgtgccacatggcacacccttttaaaaaaaaaaaaattcaattaaaggagaat 11476754  T
Q  148 a--agagaacac------gatagaacagtgaaaactcaaaaacccattcctcttctcttc-----------tctcc--tacgatgaacccaccacc---- 222  Q
    |  |||||||||      || |||| |||||||| |||||||| ||||||||||||||||           |||||  ||||| ||||||||||||        
T  11476753 aagagagaacacgtgactgagagaagagtgaaaaatcaaaaacacattcctcttctcttctcctcttctcttctccagtacgacgaacccaccacccacc 11476654  T
Q  223 ----caccttcaacttttctctcgccaccgccgacacttccctccgccgccgccgtcctctccgccaacgaccaccgttcctcttcactttctct 313  Q
        |||| |||||||||||| | ||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  11476653 cacccaccatcaacttttctc-ccccaccgccgacgcttccctccgccaccgccgtcctctccgccaacggccaccgttcctcttcactttctct 11476560  T

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Target: chr1; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 11318832 - 11318763
Alignment:
Q  50 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccctttt 119  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  11318832 tgtgtaacattgggtattttaagttatataacattgtccaatcagggtgtgccacatggcacaccctttt 11318763  T

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Target: chr1; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 11471322 - 11471391
Alignment:
Q  50 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccctttt 119  Q
    |||||||||| | | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11471322 tgtgtaacatagtggattttaagttatataacattgtccaatcagggtgtgccacgtggcacaccctttt 11471391  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 17430769 - 17430839
Alignment:
Q  50 tgtgtaacattgggt-attttaagttatataacattgcccaatcagggtgtgccacgtggcacaccctttt 119  Q
    ||||||||||||||  |||||| ||||||||| |||| ||||||||| |||||||||||||||||| ||||    
T  17430769 tgtgtaacattggggcattttatgttatataatattgtccaatcaggatgtgccacgtggcacaccatttt 17430839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 65 - 119
Target Start/End: Complemental strand, 17431757 - 17431703
Alignment:
Q  65 attttaagttatataacattgcccaatcagggtgtgccacgtggcacaccctttt 119  Q
    |||||| |||||||||||||| ||||||||||||||||| |||||||||| ||||    
T  17431757 attttatgttatataacattgtccaatcagggtgtgccatgtggcacaccttttt 17431703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 50017608 - 50017677
Alignment:
Q  50 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccctttt 119  Q
    |||||||||| | | |||||| |||||||||||||| ||||| ||| | |||||||||||||||||||||    
T  50017608 tgtgtaacatagtggattttatgttatataacattgtccaataaggatatgccacgtggcacaccctttt 50017677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 312
Target Start/End: Complemental strand, 17431601 - 17431502
Alignment:
Q  211 gaacccaccacccaccttcaacttttctctcgccaccgccgacacttccctccgccgccgccgtcctctccgccaacgaccaccgttcctcttcactttc 310  Q
    |||| ||||||||||| |||||| | ||| |||||||||||| |  ||| ||| |||||| | |||||||||||| |||||||| ||||||||| |||||    
T  17431601 gaactcaccacccaccatcaactatcctc-cgccaccgccgatatctcc-tcctccgccgtcctcctctccgccatcgaccacctttcctcttctctttc 17431504  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 273
Target Start/End: Complemental strand, 11318633 - 11318579
Alignment:
Q  218 ccacccaccttcaacttttctctcgccaccgccgacacttccctccgccgccgccg 273  Q
    ||||||||| |||||||||||| | ||||||||||| |||||||||||| ||||||    
T  11318633 ccacccaccatcaacttttctccc-ccaccgccgacgcttccctccgcctccgccg 11318579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 65 - 112
Target Start/End: Complemental strand, 50027566 - 50027519
Alignment:
Q  65 attttaagttatataacattgcccaatcagggtgtgccacgtggcaca 112  Q
    |||||| ||||| ||| |||||||||||| ||||||||||||||||||    
T  50027566 attttatgttatgtaatattgcccaatcaaggtgtgccacgtggcaca 50027519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 50017778 - 50017830
Alignment:
Q  209 atgaacccaccacccaccttcaacttttctctcgccaccgccgacacttccctc 262  Q
    |||||| |||||||||||||||||| | ||| ||||||||||||||| ||||||    
T  50017778 atgaactcaccacccaccttcaactatcctc-cgccaccgccgacacctccctc 50017830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 11318711 - 11318671
Alignment:
Q  161 agaacagtgaaaactcaaaaacccattcctcttctcttctc 201  Q
    |||| |||||||| |||||||| ||||||||||||||||||    
T  11318711 agaagagtgaaaaatcaaaaacacattcctcttctcttctc 11318671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 50 - 313
Target Start/End: Original strand, 22489252 - 22489527
Alignment:
Q  50 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacacccttttnnnnnnnnnnnt---ttaattaaatgagaa 146  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||| | |||||||||||||               | ||||||| |||||    
T  22489252 tgtgtaacattgggtattttaagttatataacattgttcaatcagggtgtgccatgcggcacacccttttttctataaaaaaaactcaattaaaggagaa 22489351  T
Q  147 taagagaacacg------atagaaca-gtgaaaactcaaaaacccattcctcttctcttctctcctacgat----gaacccaccacccaccttcaacttt 235  Q
    ||||||||||||      | |||||| |||||||||||||||| || |||| |||||||||| |||||||     |||||||||||||||| ||| ||||    
T  22489352 taagagaacacgtgactcagagaacaagtgaaaactcaaaaacgcagtcctattctcttctcccctacgacatcagaacccaccacccaccatca-cttt 22489450  T
Q  236 tctctcgccaccgccgacacttccctccgccgccgccgtcctctccgccaacgaccaccgttcctcttcactttctct 313  Q
    |||| ||||||||||||||| |||||||| ||||  | |||||||| ||| |||||||||||||||||||||||||||    
T  22489451 tctc-cgccaccgccgacacctccctccgtcgccatcctcctctccaccatcgaccaccgttcctcttcactttctct 22489527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 54 - 119
Target Start/End: Complemental strand, 22492473 - 22492408
Alignment:
Q  54 taacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccctttt 119  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22492473 taacattgggtattttaagttatataacattgcccaatcaggatgtgccacgtggcacaccctttt 22492408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 48944292 - 48944361
Alignment:
Q  50 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccctttt 119  Q
    |||||||||||||  |||||| ||||||||||||||  || |||||||||||||||||||||||| ||||    
T  48944292 tgtgtaacattggacattttatgttatataacattgttcagtcagggtgtgccacgtggcacaccttttt 48944361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 48072535 - 48072491
Alignment:
Q  74 tatataacattgcccaatcagggtgtgccacgtggcacacccttt 118  Q
    |||||| ||||||||||| ||  ||||||||||||||||||||||    
T  48072535 tatataccattgcccaattagaatgtgccacgtggcacacccttt 48072491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 43159418 - 43159350
Alignment:
Q  50 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacacccttt 118  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43159418 tgtgtaacattgggtattttaagttatataacattgtccaatcagggtgtgccacgtggcacacccttt 43159350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 38250105 - 38250174
Alignment:
Q  50 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccctttt 119  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  38250105 tgtgtaacattgggtattttaagttatataacattgtccaatcagggtgtgccacatggcacaccctttt 38250174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 38255538 - 38255469
Alignment:
Q  50 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccctttt 119  Q
    |||||||||| | | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  38255538 tgtgtaacatagtggattttaagttatataacattgtccaatcagggtgtgccacgtggcacaccctttt 38255469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 43154102 - 43154170
Alignment:
Q  50 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacacccttt 118  Q
    |||||||||| | | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43154102 tgtgtaacatagtggattttaagttatataacattgtccaatcagggtgtgccacgtggcacacccttt 43154170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 218 - 313
Target Start/End: Original strand, 38250304 - 38250404
Alignment:
Q  218 ccacccaccttcaacttttctctcgccaccgccgacacttccctc------cgccgccgccgtcctctccgccaacgaccaccgttcctcttcactttct 311  Q
    ||||||||| |||||||||||| | ||||||||||| ||||||||      ||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  38250304 ccacccaccatcaacttttctccc-ccaccgccgacgcttccctccgcctccgccgccgccgtcctctccaccaacggccaccgttcctcttcactttct 38250402  T
Q  312 ct 313  Q
    ||    
T  38250403 ct 38250404  T

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Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 218 - 313
Target Start/End: Complemental strand, 43159221 - 43159121
Alignment:
Q  218 ccacccaccttcaacttttctctcgccaccgccgacacttc------cctccgccgccgccgtcctctccgccaacgaccaccgttcctcttcactttct 311  Q
    ||||||||| |||||||||||| | ||||||||||| ||||      ||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  43159221 ccacccaccatcaacttttctc-ccccaccgccgacgcttccctccgcctccgccgccgccgtcctctccaccaacggccaccgttcctcttcactttct 43159123  T
Q  312 ct 313  Q
    ||    
T  43159122 ct 43159121  T

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Target: chr5 (Bit Score: 64; Significance: 6e-28; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 50 - 251
Target Start/End: Complemental strand, 25384134 - 25383924
Alignment:
Q  50 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacacccttttnnnnnnnnnnntttaattaaatgagaataa 149  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||            | ||||||| ||||||||    
T  25384134 tgtgtaacattgggtattttaagttatataacatggtccaatcagggtgtgccacgtggcacacccttttaaaaaaaaaaa-tcaattaaaggagaataa 25384036  T
Q  150 gagaacac------gatagaac-agtgaaaactcaaaaacccattcctcttctcttctctcctacga----tgaacccaccacccaccttcaacttttct 238  Q
     |||||||      || ||||| || |||||||||||||| |||||||||||||||||| ||| |||     |||||||||||||||| | |||||||||    
T  25384035 aagaacacgtgactgagagaacaagcgaaaactcaaaaacgcattcctcttctcttctcccctgcgacatcagaacccaccacccaccattaacttttct 25383936  T
Q  239 ctcgccaccgccg 251  Q
    | |||||||||||    
T  25383935 c-cgccaccgccg 25383924  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 25482726 - 25482787
Alignment:
Q  58 attgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccctttt 119  Q
    ||||| |||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||    
T  25482726 attggatattttaagttatataacattgcccaattaggatgtgccacatggcacaccctttt 25482787  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 25379448 - 25379517
Alignment:
Q  50 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccctttt 119  Q
    |||||||||| | | |||||| |||||||||||||| ||||| |||||||||||| ||||||||||||||    
T  25379448 tgtgtaacatagtggattttatgttatataacattgtccaataagggtgtgccacatggcacaccctttt 25379517  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 119
Target Start/End: Complemental strand, 25484313 - 25484266
Alignment:
Q  72 gttatataacattgcccaatcagggtgtgccacgtggcacaccctttt 119  Q
    |||||||||||||| ||||| |||||||||||||||||||| ||||||    
T  25484313 gttatataacattgtccaataagggtgtgccacgtggcacatcctttt 25484266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 10293022 - 10292976
Alignment:
Q  72 gttatataacattgcccaatcagggtgtgccacgtggcacacccttt 118  Q
    |||||||||||||| ||||| | ||||||||||||||||||||||||    
T  10293022 gttatataacattggccaattaaggtgtgccacgtggcacacccttt 10292976  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 313
Target Start/End: Complemental strand, 25383918 - 25383881
Alignment:
Q  276 ctctccgccaacgaccaccgttcctcttcactttctct 313  Q
    |||||||||||||||||||||| |||||||||||||||    
T  25383918 ctctccgccaacgaccaccgtttctcttcactttctct 25383881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 113
Target Start/End: Complemental strand, 23231664 - 23231600
Alignment:
Q  50 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacg-tggcacac 113  Q
    |||||||||||||  |||||| |||| ||||||||| ||||||| ||||| ||||| ||||||||    
T  23231664 tgtgtaacattggccattttatgttacataacattgtccaatcaaggtgtaccacgatggcacac 23231600  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 28167662 - 28167592
Alignment:
Q  50 tgtgtaacattgggtattttaa-gttatataacattgcccaatcagggtgtgccacgtggcacaccctttt 119  Q
    ||||||||||||||  |||||| |||||||||||||| | |||||||||||||||||| ||||||||||||    
T  28167662 tgtgtaacattgggggttttaatgttatataacattggcgaatcagggtgtgccacgtcgcacaccctttt 28167592  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 119
Target Start/End: Original strand, 54362234 - 54362300
Alignment:
Q  54 taacattgggtattttaa-gttatataacattgcccaatcagggtgtgccacgtggcacaccctttt 119  Q
    |||||||||| ||||| | |||||||||||||||| |||||||||||||||| ||||||||||||||    
T  54362234 taacattgggcatttttatgttatataacattgcctaatcagggtgtgccacatggcacaccctttt 54362300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 48792819 - 48792880
Alignment:
Q  50 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcac 111  Q
    ||||||||||||   |||||| | ||||||||||||||||||||||||||||||||||||||    
T  48792819 tgtgtaacattgaccattttatggtatataacattgcccaatcagggtgtgccacgtggcac 48792880  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 119
Target Start/End: Original strand, 28166913 - 28166981
Alignment:
Q  52 tgtaacattgggtattttaa-gttatataacattgcccaatcagggtgtgccacgtggcacaccctttt 119  Q
    ||||||||||||  |||||| |||||||||||||| | |||||||||||||||||||||||||| ||||    
T  28166913 tgtaacattgggggttttaatgttatataacattggcgaatcagggtgtgccacgtggcacaccttttt 28166981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 48796086 - 48796046
Alignment:
Q  74 tatataacattgcccaatcagggtgtgccacgtggcacacc 114  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  48796086 tatataacattgcccaatcagggtgtgccacgtggcacacc 48796046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 309
Target Start/End: Complemental strand, 33863043 - 33862946
Alignment:
Q  211 gaacccaccacccaccttcaacttttctctcgccaccgccgacacttccctccgccgccgccgtcctctccgccaacgaccaccgttcctcttcacttt 309  Q
    |||||||| ||| ||| |||||||||||| ||||||||||||||| ||||||| |||||| | ||||||| | || ||||||| |||||||||| ||||    
T  33863043 gaacccacaacctaccatcaacttttctc-cgccaccgccgacacctccctccaccgccgtcctcctctctgtcatcgaccactgttcctcttctcttt 33862946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 33862375 - 33862428
Alignment:
Q  66 ttttaagttatataacattgcccaatcagggtgtgccacgtggcacaccctttt 119  Q
    ||||| ||||||||||| |||||| |||||||||||||| ||||||||||||||    
T  33862375 ttttatgttatataacactgcccattcagggtgtgccacatggcacaccctttt 33862428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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