View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17488_low_13 (Length: 300)
Name: NF17488_low_13
Description: NF17488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17488_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 34207457 - 34207174
Alignment:
| Q |
1 |
agatacacaatcaacggctttcgttacttcaacttggttctaatcaccaacgttgcaggtgcaggtgatatagtgaagactagtgttaaaggttcaaaaa |
100 |
Q |
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| T |
34207457 |
agatacacaatcaacggctttcgttacttcaacttggttctaatcaccaacgttgcaggtgcaggtgatatagtgaagactagtgttaaaggttcaaaaa |
34207358 |
T |
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| Q |
101 |
ctggttggatgagtatgagtcgtaactgggggcaaaattggcaatcaaattctgttttggttggtcaatcactttcttttagggttacatcaagtgataa |
200 |
Q |
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| T |
34207357 |
ctggttggatgagtatgagtcgtaactgggggcaaaattggcaatcaaattctgttttggttggtcaatcactttcttttagggttacatcaagtgataa |
34207258 |
T |
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| Q |
201 |
acgtacttcaacttcttggaatattgttccctctaattggcaatttggtcaaactttcactggcaagaattttcgagtctaagg |
284 |
Q |
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| T |
34207257 |
acgtacttcaacttcttggaatattgttccctctaattggcaatttggtcaaactttcactggcaagaattttcgagtctaagg |
34207174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 275
Target Start/End: Complemental strand, 41490432 - 41490163
Alignment:
| Q |
6 |
cacaatcaacggctttcgttacttcaacttggttctaatcaccaacgttgcaggtgcaggtgatatagtgaagactagtgttaaaggttcaaaaactggt |
105 |
Q |
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| T |
41490432 |
cacaattaacggattccgttactttaacttagtcctaatcagcaacgttgcaggtgcaggggatattgtgaggacctatgttaagggcactcaaacaggg |
41490333 |
T |
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| Q |
106 |
tggatgagtatgagtcgtaactgggggcaaaattggcaatcaaattctgttttggttggtcaatcactttcttttagggttacatcaagtgataaacgta |
205 |
Q |
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| T |
41490332 |
tggatgccaatgagcagaaactgggggcaaaattggcaatcaaattctgttttggtaggtcaagctttgtccttcagagttaccggtagtgaccgtcgca |
41490233 |
T |
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| Q |
206 |
cttcaacttcttggaatattgttccctctaattggcaatttggtcaaactttcactggcaagaattttcg |
275 |
Q |
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| T |
41490232 |
cttccacttcttggaacattgctccacataattggcaatttggtcaaactttcactggaaagaattttcg |
41490163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 22312430 - 22312243
Alignment:
| Q |
1 |
agatacacaatcaacggctttcgttacttcaacttggttctaatcaccaacgttgcaggtgcaggtgatatagtgaagactagtgttaaaggttcaaaaa |
100 |
Q |
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|||| |||||||||||| || ||||||||||||||||||||| |||||||||| || |||||||| ||||| | ||||||||||| | || | |
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| T |
22312430 |
agattcacaatcaacggtttccgttacttcaacttggttctagtcaccaacgtcgcgggtgcaggggatatcatccgcgtgagtgttaaaggaaccaaca |
22312331 |
T |
|
| Q |
101 |
ctggttggatgagtatgagtcgtaactgggggcaaaattggcaatcaaattctgttttggttggtcaatcactttcttttagggttac |
188 |
Q |
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| T |
22312330 |
ccgcatggatgccaatgagtcgtaactgggggcaaaactggcaatccaacgcagtttttgttggtcaggctctttcttttagggttac |
22312243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 273
Target Start/End: Complemental strand, 23857090 - 23857023
Alignment:
| Q |
206 |
cttcaacttcttggaatattgttccctctaattggcaatttggtcaaactttcactggcaagaatttt |
273 |
Q |
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||||||| |||||||| |||| ||| ||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
23857090 |
cttcaacatcttggaacattgctcctcctagttggcaatttggtcaaactttcactggaaagaatttt |
23857023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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