View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17488_low_2 (Length: 690)
Name: NF17488_low_2
Description: NF17488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17488_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 19 - 473
Target Start/End: Complemental strand, 1385980 - 1385505
Alignment:
| Q |
19 |
ccttgaggcgtgtgttataaatgatctaagataattaatgatttgatccattgttaatcatgttatggactattccctgcatagggtaataatcttaggt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1385980 |
ccttgaggcgtgtgttataaatgatctaagataattaatgatttgatccattgttaatcatgttatggactattccctgcatagggtaataatcttaggt |
1385881 |
T |
|
| Q |
119 |
gtcattgctaggttcaatctgtactactgttattgggagggcgtgaagtacctccaaccttaccttccatgccaatttctccggacgaaaataac----- |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1385880 |
atcattgctaggttcaatctgtactactgttattgggagggcgtgaagtacctccaaccttaccttccatgccaatttctccggacgaaaataaccaggt |
1385781 |
T |
|
| Q |
214 |
-------------ttggttggagtttaattgatagtttttgctggtcaaatatctggctcatgaaacattttattagggatttattggtacgccagaaaa |
300 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1385780 |
attactacattatttggttggagtttgattgatagtttttgctggtcaaatatctggctcatgaaacattttattagggatttattggtacgccagaaaa |
1385681 |
T |
|
| Q |
301 |
attcagtgtccctcagagattagcttcgttgattagatttcatgaaaagcggaaggaacgaaattttgacnnnnnnnttcgttatactgttcgtaaaga- |
399 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1385680 |
atttagcgtccctcagagattagcttcgttgattagatttcatgaaaagcggaaggaacgaaattttgacaaaaaaattcgttatactgttcgtaaagaa |
1385581 |
T |
|
| Q |
400 |
--agtagcattgaggtatggttcttactatcattatttttagattgaacttgtttcgaatatttgtctgcattgaa |
473 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1385580 |
gtagtagcattgaggtatggttcttactaacattatttttagattgaacttgtttcgaatatttgtctgcgttgaa |
1385505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 517 - 673
Target Start/End: Complemental strand, 1373156 - 1373000
Alignment:
| Q |
517 |
gttgtaggcattgtggcatcagtgagaagtgcacgccaatgatgcggcgtggacctgaagggccaagaaccctctgcaatgcttgtggacttatgtcggc |
616 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1373156 |
gttgtaggcaatgtaacatcagtgagaagtgcacgccaatgatgcggcgtggacctgaagggccaagaaccctctgcaatgcttgtggacttatgtgggc |
1373057 |
T |
|
| Q |
617 |
aaacaaggtaaatgggaactgtgttaattcctcatgtcaattgctatctttttgttt |
673 |
Q |
| |
|
||| |||||||||||||||| |||||||| |||||||||||| |||| |||||||| |
|
|
| T |
1373056 |
aaataaggtaaatgggaactatgttaattattcatgtcaattgttatccttttgttt |
1373000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 524 - 613
Target Start/End: Complemental strand, 1384958 - 1384869
Alignment:
| Q |
524 |
gcattgtggcatcagtgagaagtgcacgccaatgatgcggcgtggacctgaagggccaagaaccctctgcaatgcttgtggacttatgtc |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1384958 |
gcattgtggcatcagtgagaagtgcacgccaatgatgcggcgtggacctgaagggccaagaaccctctgcaatgcttgtggactcatgtc |
1384869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 520
Target Start/End: Complemental strand, 1385509 - 1385480
Alignment:
| Q |
491 |
ttgaattatattcgtaaatgcttttggttg |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
1385509 |
ttgaattatattcgtaaatgcttttggttg |
1385480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University