View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17488_low_22 (Length: 201)
Name: NF17488_low_22
Description: NF17488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17488_low_22 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 45254042 - 45253943
Alignment:
| Q |
1 |
tatatttccttcagtaggaaaaaccatttcattcatcagtgtattcaaagtgactagaataacatccacaagtccttgcaaattctcataagttgatatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45254042 |
tatatttccttcagtaggaaaaaccatttcattcatcagtgtattcaaagtgactagaataacatccacaagtccttgcaaattctcataagttgatatt |
45253943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 44261597 - 44261696
Alignment:
| Q |
1 |
tatatttccttcagtaggaaaaaccatttcattcatcagtgtattcaaagtgactagaataacatccacaagtccttgcaaattctcataagttgatatt |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44261597 |
tatatttccttcgataggaaaaaccatttcattcatcagtgtattcaaagtgactagaataatatccacaagtccttgcaaattctcataagttgatatt |
44261696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University