View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17488_low_3 (Length: 565)

Name: NF17488_low_3
Description: NF17488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17488_low_3
NF17488_low_3
[»] chr8 (10 HSPs)
chr8 (19-551)||(25391349-25391876)
chr8 (120-551)||(25358318-25358747)
chr8 (205-551)||(25677973-25678318)
chr8 (19-551)||(25617227-25617754)
chr8 (21-181)||(25494811-25494967)
chr8 (205-314)||(25494704-25494812)
chr8 (112-181)||(25678317-25678386)
chr8 (362-497)||(9229278-9229414)
chr8 (500-550)||(25494652-25494702)
chr8 (397-490)||(44300477-44300568)
[»] scaffold0466 (1 HSPs)
scaffold0466 (30-551)||(7955-8481)
[»] scaffold1041 (2 HSPs)
scaffold1041 (19-376)||(868-1220)
scaffold1041 (180-218)||(1221-1259)
[»] chr1 (2 HSPs)
chr1 (348-487)||(29360204-29360344)
chr1 (316-456)||(5716885-5717024)
[»] chr6 (4 HSPs)
chr6 (316-487)||(1094400-1094573)
chr6 (362-502)||(34249307-34249448)
chr6 (362-460)||(1090688-1090785)
chr6 (326-463)||(20728171-20728307)
[»] chr5 (3 HSPs)
chr5 (362-490)||(32743607-32743736)
chr5 (362-474)||(16098386-16098498)
chr5 (370-458)||(39777398-39777485)
[»] scaffold0009 (1 HSPs)
scaffold0009 (362-458)||(3228-3324)
[»] chr3 (1 HSPs)
chr3 (337-457)||(25079982-25080103)
[»] chr2 (1 HSPs)
chr2 (385-461)||(40709191-40709267)
[»] chr4 (1 HSPs)
chr4 (364-490)||(18982262-18982387)


Alignment Details
Target: chr8 (Bit Score: 436; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 19 - 551
Target Start/End: Complemental strand, 25391876 - 25391349
Alignment:
Q  19 tagaaagtgtgcaatgaaggacacaaggaaagaatagttgcaaaaggctacactgaaaagattgattgaaatatatatagtattttttgcaagtcgctca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    |||||||| ||||||| ||||    
T  25391876 tagaaagtgtgcaatgaaggacacaaggaaagaatagttgcaaaaggctacacttgaaagattgattgaaatata----gtatttttcgcaagtctctca 25391781  T
Q  119 tcaaattaccgtaagaatagtactctcacaagttgaaaaacacgagttgagagctcctcatatcgacaagaagtatacctttttgaatggagtcctatag 218  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||| ||||||||    
T  25391780 tcaaaataccgtaagaatagtactctcacaagttgaaaaacacgagttgagagctcctcatatggacgagaagtatgcctttttgaatggattcctatag 25391681  T
Q  219 aaagaactatacattaagaaaaccattgggatacaaagtaaaaagtgagagggaaacaagatattactgttggaaatattaataggaaatagatttggga 318  Q
    ||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||    
T  25391680 aaataactatacattaagaaa-ccattgggatacaaagtaaaaagcgagagggaaacaatatattactgttggaaatattaataggaaatagatttcgga 25391582  T
Q  319 aagatagaagagagatgatgtgccgtggaaaaagtcactgaaatgaaagcaaattttcggtggacctccggtgcaatccaatatccggttttgctcccca 418  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25391581 aagatagaagagagatgttgtgccgtggaaaaagtcactaaaatgaaagcaaattttcggtggacctccggtgcaatccaatatccggttttgctcccca 25391482  T
Q  419 aggtttacacaactacgtatctgaactcgtgcactcgaggccagcactttggagcttcataaacaatgcccagaataatcgagaatagaatataaaataa 518  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||    
T  25391481 aggtttacacaactatgtatctgaactcgtgcactcgaggccagcactttggagcttcataaacaatgcccaaaataatcgagaatagaatataaaacaa 25391382  T
Q  519 tgaacttgatttttgacaacttatctgctcccc 551  Q
    |||||||||||||||||||||||||||||||||    
T  25391381 tgaacttgatttttgacaacttatctgctcccc 25391349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 120 - 551
Target Start/End: Complemental strand, 25358747 - 25358318
Alignment:
Q  120 caaattaccgtaagaatagtactctcacaagttgaaaaacacgagttgagagctcctcatatcgacaagaagtatacctttttgaatggagtcctataga 219  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||| |||||||||    
T  25358747 caaaataccgtaagaatagtactctcacaagttgaaaaacacgagttgagagctcctcatatggacgagaagtatgcctttttgaatggattcctataga 25358648  T
Q  220 aagaactatacattaagaaaaccattgggatacaaagtaaaaagtgagagggaaacaagatattactgttggaaatattaataggaaatagatttgggaa 319  Q
    |||| || |||||||||||| ||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||| ||||    
T  25358647 aaga-ctgtacattaagaaa-ccattgggatacaaagtaaaaagcgagaggtaaacaatatattactgttggaaatattaataggaaatagattttggaa 25358550  T
Q  320 agatagaagagagatgatgtgccgtggaaaaagtcactgaaatgaaagcaaattttcggtggacctccggtgcaatccaatatccggttttgctccccaa 419  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25358549 agatagaagagagatgttgtgccgtggaaaaagtcactgaaatgaaagcaaattttcggtggacctccggtgcaatccaatatccggttttgctccccaa 25358450  T
Q  420 ggtttacacaactacgtatctgaactcgtgcactcgaggccagcactttggagcttcataaacaatgcccagaataatcgagaatagaatataaaataat 519  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||    
T  25358449 ggtttacacaactatgtatctgaactcgtgcactcgagaccagcactttggagcttcataaacaatgcccaaaataatcgagaatagaatataaaacaat 25358350  T
Q  520 gaacttgatttttgacaacttatctgctcccc 551  Q
    |||||||||||||||||||||||||| |||||    
T  25358349 gaacttgatttttgacaacttatctgatcccc 25358318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 205 - 551
Target Start/End: Complemental strand, 25678318 - 25677973
Alignment:
Q  205 atggagtcctatagaaagaactatacattaagaaaaccattgggatacaaagtaaaaagtgagagggaaacaagatattactgttggaaatattaatagg 304  Q
    ||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  25678318 atggattcctatagaaagaattatacattaagaaa-ccattgggatacaaagtaaaaagcgagagggaaacaagatattactgttggaaatattaatagg 25678220  T
Q  305 aaatagatttgggaaagatagaagagagatgatgtgccgtggaaaaagtcactgaaatgaaagcaaattttcggtggacctccggtgcaatccaatatcc 404  Q
    |||||||||| |||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25678219 aaatagatttcggaaagatagaagagagatgttgtgtcgtggaaaaagccactgaaatgaaagcaaattttcggtggacctccggtgcaatccaatatcc 25678120  T
Q  405 ggttttgctccccaaggtttacacaactacgtatctgaactcgtgcactcgaggccagcactttggagcttcataaacaatgcccagaataatcgagaat 504  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||| |||||| ||||||    
T  25678119 ggttttgctttccaaggtttacacaactacgtatctgaactcgtgcactcgaggccagcatgttggagcttcacaaacaatgcccaaaataattgagaat 25678020  T
Q  505 agaatataaaataatgaacttgatttttgacaacttatctgctcccc 551  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  25678019 agaatataaaataatgaacttgatttttgacaacttatctgctcccc 25677973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 551
Target Start/End: Complemental strand, 25617754 - 25617227
Alignment:
Q  19 tagaaagtgtgcaatgaaggacacaaggaaagaatagttgcaaaaggctacactgaa-------aagattgattgaaatatatatagtattttttgcaag 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    ||||||||||||||    
T  25617754 tagaaagtgtgcaatgaaggacacaaggaaagaatagttgcaaaaggctacactgaagtctgaaaagattgattgaaatata----gtattttttgcaag 25617659  T
Q  112 tcgctcatcaaatt-accgtaagaatagtactctcacaagttgaaaaacacgagttgagagctcctcatatcgacaagaagtatacctttttgaatggag 210  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||| |||||||||||| ||    
T  25617658 tcgctcatcaaatttaccgtaagaatagtactctcacaagttgaaaaacacgagttgagagctcctcatatgggcgagaagtatgcctttttgaatgcag 25617559  T
Q  211 tcctatagaaagaactatacattaagaaaaccattgggatacaaagtaaaaagtgagagggaaacaagatattactgttggaaatattaataggaaatag 310  Q
    ||            |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  25617558 tc------------ctatacattaag-aaaccatagggatacaaagtaaaaagtgagagggaaacaagatattagcgttggaaatattaataggaaatag 25617472  T
Q  311 att---------tgggaaagatagaa---gagagatgatgtgccgtg-gaaaaagtcactgaaatgaaagcaaattttcggtggacctccggtgcaatcc 397  Q
    |||         | ||||||||||||    |||| || |||||||||  ||||||  ||| | |||||||||||||| ||||||||||||||||||||||    
T  25617471 atttcggatagataggaaagatagaatattagagttgttgtgccgtgacaaaaagcaactcacatgaaagcaaatttccggtggacctccggtgcaatcc 25617372  T
Q  398 aatatccggttttgctccccaaggtttacacaactacgtatctgaactcgtgcactcgaggccagcactttggagcttcataaacaatgcccagaataat 497  Q
    |||||| | |||||||| | || |||||||||||||||         ||||||||||||||| | ||| ||||||||||| ||||||||||||  |||||    
T  25617371 aatatctgattttgctctctaaagtttacacaactacg---------tcgtgcactcgaggctaacacgttggagcttcacaaacaatgcccaacataat 25617281  T
Q  498 cgagaatagaatataaaataatgaacttgatttttgacaacttatctgctcccc 551  Q
     ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25617280 tgagaataaaatataaaataatgaacttgatttttgacaacttatctgctcccc 25617227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 21 - 181
Target Start/End: Complemental strand, 25494967 - 25494811
Alignment:
Q  21 gaaagtgtgcaatgaaggacacaaggaaagaatagttgcaaaaggctacactgaaaagattgattgaaatatatatagtattttttgcaagtcgctcatc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    || |||||||||| ||||||||||||||    
T  25494967 gaaagtgtgcaatgaaggacacaaggaaagaatagttgcaaaaggctacactgaaaagattgattgaa----atttagtatttttcgcaagtcgctcatc 25494872  T
Q  121 aaattaccgtaagaatagtactctcacaagttgaaaaacacgagttgagagctcctcatat 181  Q
    |||||||| ||||||||||| |||||||| |||||||||| ||||||||||||||||||||    
T  25494871 aaattaccataagaatagtaatctcacaaattgaaaaacatgagttgagagctcctcatat 25494811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 205 - 314
Target Start/End: Complemental strand, 25494812 - 25494704
Alignment:
Q  205 atggagtcctatagaaagaactatacattaagaaaaccattgggatacaaagtaaaaagtgagagggaaacaagatattactgttggaaatattaatagg 304  Q
    ||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  25494812 atggattcctatagaaagaattatacattaagaaa-ccattgggatacaaagtaaaaagcgagagggaaacaatatattactgttggaaatattaatagg 25494714  T
Q  305 aaatagattt 314  Q
    ||||||||||    
T  25494713 aaatagattt 25494704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 112 - 181
Target Start/End: Complemental strand, 25678386 - 25678317
Alignment:
Q  112 tcgctcatcaaattaccgtaagaatagtactctcacaagttgaaaaacacgagttgagagctcctcatat 181  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  25678386 tcgctcatcaaattaccgtaagaatagtactttcacaagttgaaaaacatgagttgagagctcctcatat 25678317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 362 - 497
Target Start/End: Original strand, 9229278 - 9229414
Alignment:
Q  362 tgaaagcaaattttcggtggacctccggtgcaatccaatatccggttttgctccccaaggtttacacaactacgtatctgaactcgtgcactcga-ggcc 460  Q
    |||||| ||||||||| | |||||| | ||||| ||||||||||||||||||| ||||||||||||||| | | | ||||||||||||||||  | |||     
T  9229278 tgaaagaaaattttcgatagacctcagatgcaacccaatatccggttttgctctccaaggtttacacaattgcatgtctgaactcgtgcacttaagggca 9229377  T
Q  461 agcactttggagcttcataaacaatgcccagaataat 497  Q
    | |||  |||||||||| |||||||| ||||||||||    
T  9229378 aacacaatggagcttcacaaacaatgtccagaataat 9229414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 500 - 550
Target Start/End: Complemental strand, 25494702 - 25494652
Alignment:
Q  500 agaatagaatataaaataatgaacttgatttttgacaacttatctgctccc 550  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  25494702 agaatagaatataaaatgatgaacttgatttttgacaacttatctgctccc 25494652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 397 - 490
Target Start/End: Complemental strand, 44300568 - 44300477
Alignment:
Q  397 caatatccggttttgctccccaaggtttacacaactacgtatctgaactcgtgcactcgaggccagcactttggagcttcataaacaatgccca 490  Q
    |||||||| |||||||||||||||||||||||||||| |  |||||||||||  |||||| |||| ||| ||||||| ||| |||| |||||||    
T  44300568 caatatccagttttgctccccaaggtttacacaactagg--tctgaactcgtatactcgaagccaacacgttggagcctcacaaacgatgccca 44300477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 30 - 551
Target Start/End: Original strand, 7955 - 8481
Alignment:
Q  30 caatgaaggacacaaggaaagaatagttgcaaaaggctacactgaaaagattgattgaaatatatatagtattttttgcaagtcgctcatcaaattaccg 129  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||    ||||||||| ||||||| ||||||||| ||||     
T  7955 caatgaaggacacaaggaaagaatagttgcaaaaggctaagctgaaaatattgattgaaatat----agtatttttcgcaagtcactcatcaaaatacca 8050  T
Q  130 taagaatagtactctcacaagttgaaaaacacgagttgagagctcctcatatcgacaagaagtatacctttttgaatggagtcctatagaaagaactata 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||    
T  8051 taagaatagtactctcacaagttgaaaaacacgagttgagagctcctcatatggacaagaactatgcctttttgaatggagtcctatagaaagaactata 8150  T
Q  230 cattaagaaaaccattgggatacaaagtaaaaagtgagagggaaacaagatattactgttggaaatattaataggaaatagatttgg--------gaaag 321  Q
    |||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||        |||||    
T  8151 catttag-aaaccattgggatacaaagtgaaaagtgagagggaaacaagatattactgttggaaatattaataggaaatag-ttcggatagatacgaaag 8248  T
Q  322 atagaagagagatgatgtgccgtggaaaaagtcactgaaatgaaagcaaattttcggtggacctccggtgcaatccaatatccggttttgctccccaagg 421  Q
    ||||||||||| || || ||||||| |||||  ||||  |||||||||||||| |  |||||||| ||||||||  |||||||||||||||||||||| |    
T  8249 atagaagagagttgttgcgccgtggcaaaagcaactgccatgaaagcaaatttccaatggacctctggtgcaatttaatatccggttttgctccccaatg 8348  T
Q  422 tttacacaactacgtatctgaactcgtgcactcgaggccagcactttggagcttcataaacaatgcccagaataatcgagaatagaatataaaataatga 521  Q
    ||||||||||||||| |||||||||||||||| ||||| ||||| ||||||||||| ||||||| |||| |||||| |||||||||||||||||||||||    
T  8349 tttacacaactacgtgtctgaactcgtgcacttgaggctagcacgttggagcttcacaaacaatacccaaaataattgagaatagaatataaaataatga 8448  T
Q  522 acttgatttttgacaac---ttatctgctcccc 551  Q
    |||||||||||||||||   |||||||||||||    
T  8449 acttgatttttgacaactaattatctgctcccc 8481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1041 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: scaffold1041
Description:

Target: scaffold1041; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 19 - 376
Target Start/End: Original strand, 868 - 1220
Alignment:
Q  19 tagaaagtgtgcaatgaaggacacaaggaaagaatagttgcaaaaggctacactgaaaagattgattgaaatatatatagtattttttgcaagtcgctca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||| ||||||||||||    
T  868 tagaaagtgtgcaatgaaggacacaaggaaagaatagttgcaaaaggctacactgaaaagattgattgaaatat----agtatttttcgcaagtcgctca 963  T
Q  119 tcaaattaccgtaagaatagtactctcacaagttgaaaaacacgagttgagagctcctcatatcgacaagaagtatacctttttgaatggagtcctatag 218  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||    
T  964 tcaaaataccgtaagaatagtactctcacgagttgaaaaacacgagttgagagctcctcatatggacaagaagtgtgcctttttgaatggagtcctatag 1063  T
Q  219 aaagaactatacattaagaaaaccattgggatacaaagtaaaaagtgagagggaaacaagatattactgttggaaatattaataggaaatagatttggga 318  Q
    ||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| |||    
T  1064 aaagaactatacatttag-aaaccattgggatacaaagtaaaaagcgagagggaaacaagatattactgttgaaaatattattaggaaatagatttcgga 1162  T
Q  319 aagatagaagagagatgatgtgccgtggaaaaagtcactgaaatgaaagcaaattttc 376  Q
    ||||||||||||||||| ||  |||||||||||| |||||||||||||||||||||||    
T  1163 aagatagaagagagatgttgcaccgtggaaaaagccactgaaatgaaagcaaattttc 1220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1041; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 218
Target Start/End: Original strand, 1221 - 1259
Alignment:
Q  180 atcgacaagaagtatacctttttgaatggagtcctatag 218  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  1221 atcgacaagaagtatgcctttttgaatggagtcctatag 1259  T

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Target: chr1 (Bit Score: 81; Significance: 7e-38; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 348 - 487
Target Start/End: Complemental strand, 29360344 - 29360204
Alignment:
Q  348 aaaagtcactgaaatgaaagcaaattttcggtggacctccggtgcaatccaatatccggttttgctccccaaggtttacacaactacgtatctgaactcg 447  Q
    |||||||||||   ||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||| ||| |||||| |||    
T  29360344 aaaagtcactgccttgaaagcaaattttcggtggacctccggtgcaacccaatatccgattttgctcctcaaggtttacacaactgcgtgtctgaattcg 29360245  T
Q  448 tgcactcgaggcc-agcactttggagcttcataaacaatgc 487  Q
    |||||| |||||| | |||  ||||||||||||||||||||    
T  29360244 tgcacttgaggccaaacacgatggagcttcataaacaatgc 29360204  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 316 - 456
Target Start/End: Complemental strand, 5717024 - 5716885
Alignment:
Q  316 ggaaagatagaagagagatgatgtgccgtggaaaaagtcactgaaatgaaagcaaattttcggtggacctccggtgcaatccaatatccggttttgctcc 415  Q
    ||||||||||||||||| || |||||||||| ||||  |||||   |||| |||||||| ||||| || |||||||||| ||||  |||| |||||||||    
T  5717024 ggaaagatagaagagagttgttgtgccgtggtaaaaaccactgccctgaatgcaaatttccggtgtacttccggtgcaacccaa-gtccgattttgctcc 5716926  T
Q  416 ccaaggtttacacaactacgtatctgaactcgtgcactcga 456  Q
    ||||  ||||||||||| ||| ||| ||||| | |||||||    
T  5716925 ccaaaatttacacaactgcgtgtctaaactcatccactcga 5716885  T

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Target: chr6 (Bit Score: 80; Significance: 3e-37; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 316 - 487
Target Start/End: Original strand, 1094400 - 1094573
Alignment:
Q  316 ggaaagatagaagagagatgatgtgccgtggaaaaagtcactgaaatgaaagcaaattttcggtggacctccgg-tgcaatccaatatccggttttgctc 414  Q
    ||||||||||||||||| || |||||||||  |||||||||||   ||||||||||||||||||||| |||||| ||||| |||| ||||||||||||||    
T  1094400 ggaaagatagaagagagttgttgtgccgtgacaaaagtcactgtcctgaaagcaaattttcggtggatctccgggtgcaacccaa-atccggttttgctc 1094498  T
Q  415 cccaaggtttacacaactacgtatctgaactcgtgcactcgaggcc--agcactttggagcttcataaacaatgc 487  Q
    || ||||||||||||||| ||| | |||||||||||||||||||||  | |||  |||||||||| |||||||||    
T  1094499 cctaaggtttacacaactgcgtgtgtgaactcgtgcactcgaggcctgaacacgatggagcttcacaaacaatgc 1094573  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 362 - 502
Target Start/End: Complemental strand, 34249448 - 34249307
Alignment:
Q  362 tgaaagcaaattttcggtggacctccggtgcaatccaatatccggttttgctccccaaggtttacacaactacgtatctgaactcgtgcactcgag-gcc 460  Q
    |||||| ||||||||||||||||||| ||||||  || ||||| ||||||||||||||| |||||| |||| | | ||||||||||||||||||||  |     
T  34249448 tgaaagaaaattttcggtggacctccagtgcaactcattatccagttttgctccccaagatttacataactgcatgtctgaactcgtgcactcgagatca 34249349  T
Q  461 agcactttggagcttcataaacaatgcccagaataatcgaga 502  Q
    | |||  ||||||||||||||||||||||| |||||| ||||    
T  34249348 aacacgatggagcttcataaacaatgcccaaaataatagaga 34249307  T

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Target: chr6; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 362 - 460
Target Start/End: Original strand, 1090688 - 1090785
Alignment:
Q  362 tgaaagcaaattttcggtggacctccggtgcaatccaatatccggttttgctccccaaggtttacacaactacgtatctgaactcgtgcactcgaggcc 460  Q
    ||||||| |||||||| ||||||| | |||||| |||| |||||||||| ||||||||| ||||||||||||||| ||||||||||  |||||||||||    
T  1090688 tgaaagctaattttcgatggaccttcagtgcaacccaa-atccggttttactccccaagatttacacaactacgtgtctgaactcggacactcgaggcc 1090785  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 326 - 463
Target Start/End: Original strand, 20728171 - 20728307
Alignment:
Q  326 aagagagatgatgtgccgtggaaaaagtcactgaaatgaaagcaaattttcggtggacctccggtgcaatccaatatccggttttgctccccaaggttta 425  Q
    ||||||| || |||||||||  |||||||||||   | ||||||||||| |||||||| ||||||| || | || || | ||||||||| ||||  ||||    
T  20728171 aagagagttgttgtgccgtgacaaaagtcactggtttaaaagcaaatttccggtggacttccggtgtaacctaaaattcagttttgctctccaaaattta 20728270  T
Q  426 cacaactacgtatctgaactcgtgcactcgaggccagc 463  Q
    ||||||||||| | |||| | |||||||||||||||||    
T  20728271 cacaactacgtgtttgaa-ttgtgcactcgaggccagc 20728307  T

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Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 362 - 490
Target Start/End: Original strand, 32743607 - 32743736
Alignment:
Q  362 tgaaagcaaattttcggtggacctccggtgcaatccaatatccggttttgctccccaaggtttacacaactacgtatctgaactcgtgcactcgaggcc- 460  Q
    ||||||||||||| ||||||||||||| ||||||| ||| ||| | ||||||||||||||||||||||||| | | ||||||||| |||||| ||||||     
T  32743607 tgaaagcaaatttccggtggacctccgatgcaatctaatttcctgatttgctccccaaggtttacacaactgcttgtctgaactcatgcacttgaggcca 32743706  T
Q  461 agcactttggagcttcataaacaatgccca 490  Q
    | |||  |||||||||| ||||||| ||||    
T  32743707 aacacgatggagcttcacaaacaataccca 32743736  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 362 - 474
Target Start/End: Original strand, 16098386 - 16098498
Alignment:
Q  362 tgaaagcaaattttcggtggacctccggtgcaatccaatatccggttttgctccccaaggtttacacaactacgtatctgaactcgtgcactcgaggcca 461  Q
    |||||||||| || ||||||| |||| ||||||| ||||| ||||||||||||  ||| |||||||||||||||| | ||||||||| ||||||||||||    
T  16098386 tgaaagcaaaattccggtggatctccagtgcaattcaataaccggttttgctcttcaaagtttacacaactacgtgtgtgaactcgttcactcgaggcca 16098485  T
Q  462 gcactttggagct 474  Q
     ||| ||||||||    
T  16098486 acacgttggagct 16098498  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 370 - 458
Target Start/End: Complemental strand, 39777485 - 39777398
Alignment:
Q  370 aattttcggtggacctccggtgcaatccaatatccggttttgctccccaaggtttacacaactacgtatctgaactcgtgcactcgagg 458  Q
    ||||||||||||||||||||| ||| |||  ||||||||||||||||||| |||||||||||| ||| | |||||   |||||||||||    
T  39777485 aattttcggtggacctccggtacaacccag-atccggttttgctccccaaagtttacacaactgcgtgtttgaacctatgcactcgagg 39777398  T

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Target: scaffold0009 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 362 - 458
Target Start/End: Original strand, 3228 - 3324
Alignment:
Q  362 tgaaagcaaattttcggtggacctccggtgcaatccaatatccggttttgctccccaaggtttacacaactacgtatctgaactcgtgcactcgagg 458  Q
    |||||||||||||| |||| | |||||||||||| ||||||||| |||| |||| ||||||||| |||| | ||| ||||||| |||||||||||||    
T  3228 tgaaagcaaatttttggtgaaactccggtgcaattcaatatccgattttactcctcaaggtttatacaatttcgtgtctgaacccgtgcactcgagg 3324  T

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Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 337 - 457
Target Start/End: Original strand, 25079982 - 25080103
Alignment:
Q  337 tgtgccgtggaaaaagtcactgaaatgaaagcaaattttcggtggacctccggtgcaatccaatatcc-ggttttgctccccaaggtttacacaactacg 435  Q
    ||||| |||| ||||| |||||   ||||||||||||| || |||||||||||||||| |||||| || |||||| ||||  ||||||||||||| |  |    
T  25079982 tgtgcagtggcaaaagccactgctctgaaagcaaatttccgctggacctccggtgcaacccaatacccgggtttttctccgtaaggtttacacaattgtg 25080081  T
Q  436 tatctgaactcgtgcactcgag 457  Q
    | ||||||||||||||||||||    
T  25080082 tgtctgaactcgtgcactcgag 25080103  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 385 - 461
Target Start/End: Complemental strand, 40709267 - 40709191
Alignment:
Q  385 tccggtgcaatccaatatccggttttgctccccaaggtttacacaactacgtatctgaactcgtgcactcgaggcca 461  Q
    |||||||||| |||||||||||||||||||||||| |||||||  ||| | | ||||||| | ||||||||||||||    
T  40709267 tccggtgcaacccaatatccggttttgctccccaaagtttacattactgcatgtctgaacccatgcactcgaggcca 40709191  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 490
Target Start/End: Original strand, 18982262 - 18982387
Alignment:
Q  364 aaagcaaattttcggtggacctccggtgcaatccaatatccggttttgctccccaaggtttacacaactacgtatctgaactcgtgcactcgaggccagc 463  Q
    |||||||||||||| | |||||||| |  ||||| |||| || ||||||||| ||| | ||||  ||||| || ||||| | ||||||||||||| || |    
T  18982262 aaagcaaattttcgatagacctccgatataatcccatattcgattttgctcctcaaaggttacgtaactatgtgtctgacc-cgtgcactcgaggtcaac 18982360  T
Q  464 actttggagcttcataaacaatgccca 490  Q
    || ||||||||||| ||||||| ||||    
T  18982361 acattggagcttcacaaacaataccca 18982387  T

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