View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17488_low_5 (Length: 551)
Name: NF17488_low_5
Description: NF17488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17488_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 486; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 10 - 535
Target Start/End: Complemental strand, 48466797 - 48466273
Alignment:
| Q |
10 |
agatgaatgtagaactttatgtatagtcttcattttgaaaacactcatgttgaattccatagacggaaaataaaaatggttgatatacaagctcacaata |
109 |
Q |
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| T |
48466797 |
agatgaatgtagaactttatgtatagtctttattttgaaaacactcatgttgaattccatagacggaaaataaatatggttgatatacaagctcacaata |
48466698 |
T |
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| Q |
110 |
ctatacaagctaaaaggtgcaagttattttcttcttttggtaacttgtatctgttttgatttttgctacttttggtaaactgtaattctgatttctgaat |
209 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48466697 |
ctatacaagataaaaggtgcaagttattttcttcttttggtaacttgtatttgttttgatttttgctacttttggtaaactgtaattctgatttctgaat |
48466598 |
T |
|
| Q |
210 |
ccatatagcgtgaatcagaagtttttatttgataatatttgttacaaaggtattacattgtttagagaaccatgcactgtgtttttgttttgtctgcatt |
309 |
Q |
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| T |
48466597 |
ccatatagtgtgaatcagaagtttttatttgatattatttgttacaaaggtattacattgtttagagaaccatgcactgtgtttttgttttgtctgcatt |
48466498 |
T |
|
| Q |
310 |
ttttaatgtagtgaattggtgattcaagatttgcttgctgtgagtggaaatcagtatcatagaaatgtggaaactgtagaaagaaaggactattagacct |
409 |
Q |
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| T |
48466497 |
ttttaatgtagtgaattggtgattcaagatttgcttgctgtgagtggaactcagtatcatagaaatgtggaaactgtagaaagaaaggactattagacct |
48466398 |
T |
|
| Q |
410 |
actgttttccaaggtttaattctcgagcactgaaaatgcccgggactcgtttaatcaagaactttgcttcattttctaattcgatcgcttggttgaatac |
509 |
Q |
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|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48466397 |
actgttttccaaggtttaattctcgagcactg-aaattcccgggactcgtttaatcaagaactttgcttcattttctaattcgatcgcttggttgaatac |
48466299 |
T |
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| Q |
510 |
attcttgggactttcactaaattgag |
535 |
Q |
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| T |
48466298 |
attcttgggactttcactaaattgag |
48466273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 470 - 535
Target Start/End: Complemental strand, 25585278 - 25585213
Alignment:
| Q |
470 |
actttgcttcattttctaattcgatcgcttggttgaatacattcttgggactttcactaaattgag |
535 |
Q |
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|||||||||||||| ||||||| |||||||||||||||||| | | || |||||||||| ||||| |
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| T |
25585278 |
actttgcttcatttgctaattcaatcgcttggttgaatacagtatcagggctttcactaagttgag |
25585213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 145; Significance: 5e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 339 - 535
Target Start/End: Complemental strand, 42077241 - 42077046
Alignment:
| Q |
339 |
tttgcttgctgtgagtggaaatcagtatcatagaaatgtggaaactgtagaaagaaaggactattagacctactgttttccaaggtttaattctcgagca |
438 |
Q |
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|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
42077241 |
tttgcttgttgtgagtggaaataagtatcatagaaatgtggaaactgtagaaagaaaggactattagacctattgttttccaaggtttaattctcaagca |
42077142 |
T |
|
| Q |
439 |
ctgaaaatgcccgggactcgtttaatcaagaactttgcttcattttctaattcgatcgcttggttgaatacattcttgggactttcactaaattgag |
535 |
Q |
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| T |
42077141 |
ctg-agatgccagagattcgtttaagcaagcactttgcttcattttctaattcgatcgcttggttgaatacattcttgggactttcactaagttgag |
42077046 |
T |
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