View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17488_low_6 (Length: 551)
Name: NF17488_low_6
Description: NF17488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17488_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 35 - 549
Target Start/End: Original strand, 41089555 - 41090071
Alignment:
| Q |
35 |
gtaaaacttctcaaatccaaaaactgttttttgacaataatatttatcttatcacataagttcattctcttctcgtagttggatcctatctgccatcggt |
134 |
Q |
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| T |
41089555 |
gtaaaacttctcaaatccaaaaactgttttttgacaataatatt-atcttatcacataagttcattctcttctcgtagttggatcctatctgccatcggt |
41089653 |
T |
|
| Q |
135 |
ttctgactatggatcgttagatcaagatgtgatttaccatctcatcatataacgtcatataaactactttactaaattaagacaaatttcctacttttga |
234 |
Q |
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| T |
41089654 |
ttctgactatggatcgttagatcaagatgtgatttaccatctcatcatataatgtcatataaactactttactaaattaagacaaatttcctacttttga |
41089753 |
T |
|
| Q |
235 |
aataattcgatatcatgatccaacatttctcatatttaacttttcaattta-ttacttaatttagcagaatcacagctttctattgaattaacatcattc |
333 |
Q |
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|||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
41089754 |
aataatacgatatcatgatccaacatttctcatatttaagttttcaatttatttacttaatttagcagcatcacagctttctattgaattaatatcattc |
41089853 |
T |
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| Q |
334 |
aaaagtgggggcttgtgcttgtaacaagtaactgaagagaatagaccgaatcaataacgtaaaaatagttttctcttttgctaaaaatagcttcctcttg |
433 |
Q |
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| T |
41089854 |
aaaagtgggggcttgtgcttgtaacaagtaacagaagagaatagaccgaatcaataacgtaaaaatagttttctcttttgctaaaaatagcttcctcttg |
41089953 |
T |
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| Q |
434 |
gtcacaatcac--nnnnnnnnnnnnngaataaatgttaacgatcacatttatgttggcatatgtggtagggtgtttccatttgatcaacgtctaaaaata |
531 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
41089954 |
gtcacaatcactttttttttttttttgaataaatgttaacgatcacatttatgttggcatatgtggtagggtgtttctatttgctcaacgtctaaaaata |
41090053 |
T |
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| Q |
532 |
cttggaaatatgaatgat |
549 |
Q |
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||| |||||||||||||| |
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| T |
41090054 |
cttcgaaatatgaatgat |
41090071 |
T |
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