View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17488_low_7 (Length: 436)
Name: NF17488_low_7
Description: NF17488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17488_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 116 - 425
Target Start/End: Original strand, 1755379 - 1755688
Alignment:
| Q |
116 |
aatccattagacaacaatcctgagaacaattgtctgccgtcttcataccataaacaacaaaagcaaaaatgatttgacattgcaaaagcaaccactcgtc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1755379 |
aatccattagacaacaatcctgagaacaattgtctgccatattcataccataaacaacaaaagcaaaaatgatttgacattgcaaaagcaatcactcgtc |
1755478 |
T |
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| Q |
216 |
ttcttgactgcgtagcctggccagcttgttggtgacaacaacatccaactgtgctgcacgttcaacaatgtccttccttttcttggttgacacattgtgt |
315 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1755479 |
ttcttgactgcgtagcctggccaacttgttggtgacaacaacatccaactgtgctgcacgttcaacaatgtccttccttttcctggttgacacattgtgt |
1755578 |
T |
|
| Q |
316 |
gcgatctcagcacagtatgtcctgctgtgcatcatcaaaagttacaggtcatggacattgtgcacgacaaacttcttgaatccattaggcaaatagtggc |
415 |
Q |
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|||||||||||||||||||||||| |||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1755579 |
gcgatctcagcacagtatgtcctgttgtgcatcatcaaaggttccaggtcctggacattgtgcacgacaaacttcttgaatccattaggcaaatagtggc |
1755678 |
T |
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| Q |
416 |
gggtcttctt |
425 |
Q |
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|||||||||| |
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| T |
1755679 |
gggtcttctt |
1755688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 116 - 339
Target Start/End: Complemental strand, 18705738 - 18705515
Alignment:
| Q |
116 |
aatccattagacaacaatcctgagaacaattgtctgccgtcttcataccataaacaacaaaagcaaaaatgatttgacattgcaaaagcaaccactcgtc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
18705738 |
aatccattagacaacaatcctgagaacaattgtctgccatgttcataccataaacaacaaaagcaaaaatgatttgacattgcaaaagcaatcactcgtc |
18705639 |
T |
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| Q |
216 |
ttcttgactgcgtagcctggccagcttgttggtgacaacaacatccaactgtgctgcacgttcaacaatgtccttccttttcttggttgacacattgtgt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
18705638 |
ttcttgactgcgtagcctggccagcttgttggtgacaacaacatccaactgtgctgcacgttcaacaatgtccttccttttcctggttgacacattgtgt |
18705539 |
T |
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| Q |
316 |
gcgatctcagcacagtatgtcctg |
339 |
Q |
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|||||||||||||||||||||||| |
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| T |
18705538 |
gcgatctcagcacagtatgtcctg |
18705515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 14 - 97
Target Start/End: Original strand, 1755163 - 1755246
Alignment:
| Q |
14 |
aaagtaacattttataatgatgtttatgatttctctttttctgcaggtgctgctcataattcaatcagggttgctcaggtgtat |
97 |
Q |
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| T |
1755163 |
aaagtaacattttataatgatgtttatgatttctctttttctgcaggtgctgctcataattcaatcagggttgctcaggtgtat |
1755246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 336 - 425
Target Start/End: Complemental strand, 18705431 - 18705342
Alignment:
| Q |
336 |
cctgctgtgcatcatcaaaagttacaggtcatggacattgtgcacgacaaacttcttgaatccattaggcaaatagtggcgggtcttctt |
425 |
Q |
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|||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18705431 |
cctgttgtgcatcatcaaaagttccaggtcttggacattgtgcacgacaaacttcttgaatccattaggcaaatagtggcgggtcttctt |
18705342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 26946584 - 26946500
Alignment:
| Q |
14 |
aaagtaacattttataatgatgtttatgatttctctttttctgcaggtgctgctcataattcaatcagggttgctcaggtgtatg |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
26946584 |
aaagtaacattttataatgatgtttatgatttctctttttctgcaggtgctactcataattcaatcaggtttgctcaggtgtatg |
26946500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 594777 - 594862
Alignment:
| Q |
14 |
aaagtaacattttataatgatgtttatgatttctctttttctgca-ggtgctgctcataattcaatcagggttgctcaggtgtatg |
98 |
Q |
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|||||||||||||||||||||||| || |||| ||||||| | |||||| |||| |||||||||||| |||||| ||||||| |
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| T |
594777 |
aaagtaacattttataatgatgttgatcatttttcttttttttattggtgctactcacaattcaatcaggattgctcgtgtgtatg |
594862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 28169927 - 28169850
Alignment:
| Q |
14 |
aaagtaacattttataatgatgtttatgatttctctttttctgcaggtgctgctcataattcaatcagggttgctcaggt |
93 |
Q |
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| T |
28169927 |
aaagtaacattttttttttatgtttatgatttttctttttt--caggagctactcagaattcaatcagggttgctcaggt |
28169850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 93
Target Start/End: Original strand, 22475885 - 22475928
Alignment:
| Q |
50 |
ttttctgcaggtgctgctcataattcaatcagggttgctcaggt |
93 |
Q |
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|||| |||||||||| |||| ||||||||||||||||||||||| |
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| T |
22475885 |
ttttttgcaggtgctactcagaattcaatcagggttgctcaggt |
22475928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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