View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17488_low_8 (Length: 363)
Name: NF17488_low_8
Description: NF17488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17488_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 7 - 348
Target Start/End: Complemental strand, 40994297 - 40993945
Alignment:
| Q |
7 |
gatgcaaagtgctttgaatgtaaaacatttgattctaaagactcaaatgcatccatatgagctttgtggaattgaattcttgctcaacagttgcccattg |
106 |
Q |
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| T |
40994297 |
gatgcaaagtgctttgaatgtaaaacatttgattctaaagactcaaatgcatccatatgagctttgtggaattgaattcttgctcaacagttgcccattg |
40994198 |
T |
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| Q |
107 |
cttcaaaaactcacactggacataagtccacaagttatatttgaggtgagtaaaatactttacatttcatgtctctc-----------aatatttaacat |
195 |
Q |
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| T |
40994197 |
cttgaaaaacttacattggacataagtccacaagttatatttgaggtgagtaaaatactttacatttcatgtctctctttttctctcaaatatttaacat |
40994098 |
T |
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| Q |
196 |
atatagcagtcattgatatatagttatatggtttgatttttaacacttttgaatgtttggttgtatatattacaggactatggacttccctattatagag |
295 |
Q |
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| T |
40994097 |
atatagtagtcattgatatatagttatatggtttgatttttaacacttttgaatgtttggttgtatatattacaggactatggacttccctattatagag |
40993998 |
T |
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| Q |
296 |
accttgcgagattttggcaaacgcatcgagtgtttcctcaatgcttgcaaaat |
348 |
Q |
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| T |
40993997 |
accttgcgagattttggcaaacgcgtcgagtgtttcctcaatgcttgcaaaat |
40993945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 19 - 348
Target Start/End: Complemental strand, 40986521 - 40986185
Alignment:
| Q |
19 |
tttgaatgtaaaacatttgattctaaagactcaaatgcatccatatgagctttgtggaattgaattcttgctcaacagttgcccattgcttcaaaaactc |
118 |
Q |
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| T |
40986521 |
tttgaatgtaagacatttgattctaaaaacacaaatgcataaatatgagctttgtggatttgaattcttgcttaacagttgcccgttgctagaaaaactc |
40986422 |
T |
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| Q |
119 |
acactggacataagtccacaagttatatttgaggtgagtaaaata-ctttacatttcatgtctctcaatatttaaca------tatatagcagtcattga |
211 |
Q |
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||| |||||||||||| ||||||||||||| |||||||| ||||| | ||||||||||||||||||| | | | || || |||| ||| ||||| |
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| T |
40986421 |
acattggacataagtcaacaagttatatttaaggtgagtcaaataccgttacatttcatgtctctcattttctctcaatattttacatagtagttattga |
40986322 |
T |
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| Q |
212 |
tatatagttatatggtttgatttttaacacttttgaatgtttggttgtatatattacaggactatggacttccctattatagagaccttgcgagattttg |
311 |
Q |
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| T |
40986321 |
aatatagttatgtggtttgatttttaacacttttgaatgttttctcgtatacattacaggactatagacttccctatcttacagaccttgagaaattttg |
40986222 |
T |
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| Q |
312 |
gcaaacgcatcgagtgtttcctcaatgcttgcaaaat |
348 |
Q |
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| T |
40986221 |
gcaaacgcgtcgagtgtttgctcaatgcttgcaaaat |
40986185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 126 - 348
Target Start/End: Complemental strand, 40989789 - 40989557
Alignment:
| Q |
126 |
acataagtccacaagttatatttgaggtgagt--aaaatactttacatttc--------atgtctctcaatatttaacatatatagcagtca-ttgatat |
214 |
Q |
| |
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|||||||||||||||||||||||||||||||| || |||||||||| ||| || |||||||||||||||| |||| ||||| ||||| | |
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| T |
40989789 |
acataagtccacaagttatatttgaggtgagtcaaatatactttacacttcaagtctctatttctctcaatatttaac----atagtagtcatttgatgt |
40989694 |
T |
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| Q |
215 |
atagttatatggtttgatttttaacacttttgaatgtttggttgtatatattacaggac----tatggacttccctattatagagaccttgcgagatttt |
310 |
Q |
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| T |
40989693 |
atagttatatgctttg-ggtttaacacttttgaatgtttgctcgtatatattagaggaccatatatacacttccatatcatgttgaccttaagaaatttt |
40989595 |
T |
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| Q |
311 |
ggcaaacgcatcgagtgtttcctcaatgcttgcaaaat |
348 |
Q |
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| T |
40989594 |
ggcaaactcgtcgagtgttttctcaatgcttgcaaaat |
40989557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 21180636 - 21180968
Alignment:
| Q |
1 |
ggtgaagatgcaaagtgctttgaatgtaaaacatttgattctaaagactcaaatgcatccatatgagctttgtggaattgaattcttgctcaacagttgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||| |||||||| |||||||||||||| |
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| T |
21180636 |
ggtgaagatgcaaagtgctttgaatgtaaaacatttgactctaaagactaaaatgcattcatatgagctttgtggatttgaattcatgctcaacagttgc |
21180735 |
T |
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| Q |
101 |
ccattgcttcaaaaactcacactggacataagtccacaagttatatttgaggtgagtaaaatactttacatttcatgtctctcaatatttaacatatata |
200 |
Q |
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| T |
21180736 |
ccattgcttgaaaaactcatattggacataagtccacaacttatatttgaggtcagtcaaatactttacatttc-tctctctcaatacttaac----att |
21180830 |
T |
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| Q |
201 |
gcagtcattgatatatagttatatggtttgatttttaacacttttgaatgtttggttgtatatattacaggactatggacttccctattatagagacctt |
300 |
Q |
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| | |||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||| | ||||||| |
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| T |
21180831 |
gtaatcattg----------atatggtttgatttttaatacttttgaatgattggttgtatatattacaggactatacacttccctatcaagtagacctt |
21180920 |
T |
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| Q |
301 |
gcgagattttggcaaacgcatcgagtgtttcctcaatgcttgcaaaat |
348 |
Q |
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|| |||||||||||| | ||||||||||||| |||||||| ||||| |
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| T |
21180921 |
aagaaattttggcaaactcgtcgagtgtttcctgaatgcttgaaaaat |
21180968 |
T |
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