View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17488_low_9 (Length: 363)
Name: NF17488_low_9
Description: NF17488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17488_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 8966240 - 8965884
Alignment:
| Q |
1 |
ctgaaaatctcagaatattctgtggtctgcattattctttggatttctgtttgagttaatttgataggaactgaaaacatctaaatattctttcatttta |
100 |
Q |
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| T |
8966240 |
ctgagaatctcagaatattctgtggtctgcattattctttgggtttctgtttgagttaatttgataggaactgaaaatatctaaatattctttcatttta |
8966141 |
T |
|
| Q |
101 |
ctgtcaataaagnnnnnnnnnn--ggcggtggtaaacaactataaatgaatattctttctctatgcaacttctaatgtcacctacggctaataactagca |
198 |
Q |
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| T |
8966140 |
ctgtcaataaagttttttttttttggtggtggtaaacaactataaatgaatattctttctctatgcaacttctaatgtcacctacggctaataacttgca |
8966041 |
T |
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| Q |
199 |
ctattattgnnnnnnnaattcttactatcagcatcataacctcagcctgtattgacataaaattgagggagaaattttgtactttagaagttcgttcgca |
298 |
Q |
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| T |
8966040 |
ctattattgtttttttaattcttactatcagcatcataacctcagcctgtattgacataaaattgagggagaaattttgtactttagaagttcgtttgca |
8965941 |
T |
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| Q |
299 |
ttaaaatgatacaatatgtagcagacacagggagattgtaatttaaagttttcatct |
355 |
Q |
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| T |
8965940 |
ttaaaatgatacaatatgtagcagacacagggagagtgtaatttaaagttttcatct |
8965884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 8966288 - 8966237
Alignment:
| Q |
23 |
tggtctgcattattctttggatttctgtttgagttaatttgataggaactga |
74 |
Q |
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|||| ||||||||||| ||||||||| | || |||||||||||||||||||| |
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| T |
8966288 |
tggtttgcattattctgtggatttctttctgtgttaatttgataggaactga |
8966237 |
T |
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