View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17489_low_1 (Length: 397)
Name: NF17489_low_1
Description: NF17489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17489_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 8079812 - 8079429
Alignment:
| Q |
1 |
cagaacttaggagacccttgttggccaataaattcttgtagtagttgttgtcgaattttactggtgtgacaaagtctaggacaaatagattttggtctcc |
100 |
Q |
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| T |
8079812 |
cagaacttaggagacccttgttggccaataaattcttgtagtagttgttgtcgaattttactggtgtgacaaagtctaggacaaatagattttggtctcc |
8079713 |
T |
|
| Q |
101 |
accagatcttgggcaccgagtgcgcaattgagcagcatagttttggtcaagagtgaaatctgacttgccattcccagtttggttgtagagtctttgtcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8079712 |
accagatcttgggcaccgagtgcgcaattgagcagcatagttttggtcaagagtgaaatctgacttgccattcccagtttggttgtagagtctttgtcta |
8079613 |
T |
|
| Q |
201 |
aagctagtacatcgtgaatctcctatagtgtggctacctataacattaaaagaatttgtttatgtcactgatgcaactttggaagaatccaatactaaaa |
300 |
Q |
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| T |
8079612 |
aagctggtgcatcgtgaatctcctatagtgtggctacctataacattaaaagaatttgtttatgtcactgatgcaactttggaagaatccaatactaaaa |
8079513 |
T |
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| Q |
301 |
tgaggaaaattgagataaattttgttgatgcatgaggataatatacaactgcacaatcgcggcttcatcaactatattatgcct |
384 |
Q |
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| T |
8079512 |
tgaggaaaattgagataaattttgttgatgcatgaggataatatacaactgcacaatcgcggcttcatcaactatattatgcct |
8079429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 15 - 232
Target Start/End: Original strand, 32580523 - 32580740
Alignment:
| Q |
15 |
cccttgttggccaataaattcttgtagtagttgttgtcgaattttactggtgtgacaaagtctaggacaaatagattttggtctccaccagatcttgggc |
114 |
Q |
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| T |
32580523 |
cccttgtaagccaataggttcttgaagtaattgttatcaaattttgtcggtgtgacatagtctaggaagaacagattttggtcaccaccagatcttggac |
32580622 |
T |
|
| Q |
115 |
accgagtgcgcaattgagcagcatagttttggtcaagagtgaaatctgacttgccattcccagtttggttgtagagtctttgtctaaagctagtacatcg |
214 |
Q |
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| |||||||||||| ||||||||||| ||| ||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||| || || | |
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| T |
32580623 |
attgagtgcgcaattcagcagcatagtattgatcaagagtgaaatcttgcttgccatttccagtttggttgtagagtctttgcctaaagcttgtgcacct |
32580722 |
T |
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| Q |
215 |
tgaatctcctatagtgtg |
232 |
Q |
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||| | |||||||||||| |
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| T |
32580723 |
tgactttcctatagtgtg |
32580740 |
T |
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