View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17489_low_2 (Length: 377)

Name: NF17489_low_2
Description: NF17489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17489_low_2
NF17489_low_2
[»] chr6 (15 HSPs)
chr6 (36-377)||(2658652-2658993)
chr6 (7-377)||(2952015-2952373)
chr6 (37-377)||(2937536-2937870)
chr6 (7-304)||(2927309-2927600)
chr6 (7-377)||(3003422-3003780)
chr6 (7-377)||(2964585-2964949)
chr6 (22-377)||(2974083-2974432)
chr6 (9-377)||(2934675-2935037)
chr6 (40-377)||(2982939-2983273)
chr6 (36-311)||(2997040-2997309)
chr6 (57-306)||(2929456-2929699)
chr6 (143-292)||(2978408-2978550)
chr6 (7-146)||(2979192-2979328)
chr6 (329-377)||(2927233-2927281)
chr6 (214-248)||(2954546-2954580)
[»] scaffold0024 (3 HSPs)
scaffold0024 (33-377)||(34906-35244)
scaffold0024 (7-248)||(44569-44804)
scaffold0024 (244-292)||(45120-45168)
[»] chr7 (2 HSPs)
chr7 (37-291)||(3339187-3339435)
chr7 (343-377)||(3339095-3339129)
[»] chr3 (2 HSPs)
chr3 (36-309)||(49613580-49613847)
chr3 (9-309)||(49618568-49618850)


Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 36 - 377
Target Start/End: Original strand, 2658652 - 2658993
Alignment:
Q  36 gaacaagtatatccacatcggtaccagtatttataatgtaatccaaaacaacaacataatcagcaatatatgactcctcagggtaatgacactgctccaa 135  Q
    |||||||||||||||||||  ||||||||||||||| ||||||||||||| |||||||||||| |||||||||||| | |||||||||||| ||||||||    
T  2658652 gaacaagtatatccacatccttaccagtatttataaggtaatccaaaacagcaacataatcagtaatatatgactcataagggtaatgacattgctccaa 2658751  T
Q  136 agcaaccatattccgaaataaagtttcggtcgaatcctgaacttttaattgaggaatttcaagaactcctccagattttgaaaacctcaagtcaagtaaa 235  Q
    |||||||||||| ||||| ||| |||| |||  ||| | |||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2658752 agcaaccatatttcgaaacaaaatttcagtcctatcgtcaaccgttaattgaggaatttcaagaactcctcctgattttgaaaacctcaagtcaagtaaa 2658851  T
Q  236 cacttacttttagtgctcgctttaaacctaactccagcttctaacaactcagttgcactcggtagatgtatcatccgttcttcggtcgcgttactactcg 335  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  2658852 cacttacttttagtgctcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgtatcatccgttcgtcggtcgcgttattactcg 2658951  T
Q  336 ggcgaatttcaataggaagttgcaaatgaaatatcctaatca 377  Q
    | ||||||||||||||||||||||||||||||||||||||||    
T  2658952 gtcgaatttcaataggaagttgcaaatgaaatatcctaatca 2658993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 7 - 377
Target Start/End: Complemental strand, 2952373 - 2952015
Alignment:
Q  7 tccaagaatattatccagtatatccctccgaacaagtatatccacatcggtaccagtatttataatgtaatccaaaacaacaacataatcagcaatatat 106  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2952373 tccaagcatattatctagtatatccctccgaacaagtatatccacatcggtaccagtatttataatgtaatccaaaacaacaacataatcagcaatatat 2952274  T
Q  107 gactcctcagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctgaacttttaattgaggaatttcaagaactcctc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||      
T  2952273 gactcctcagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggttgaatcctgaacttttaattgaggaatttcaagaactcc-- 2952176  T
Q  207 cagattttgaaaacctcaagtcaagtaaacacttacttttagtgctcgctttaaacctaactccagcttctaacaactcagttgcactcggtagatgtat 306  Q
        ||  ||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  2952175 ----ttccgaaaacctcaagtcaagtaaacacttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttt 2952080  T
Q  307 catccgttcttcggtcgcgttactactcgggcgaatttcaataggaagttgcaaatgaaatatcctaatca 377  Q
     |||| ||||       |    |||||||| ||| ||||||||||| ||||||||||||||||||||||||    
T  2952079 tatccattct------acaactctactcggccgactttcaataggatgttgcaaatgaaatatcctaatca 2952015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 37 - 377
Target Start/End: Complemental strand, 2937870 - 2937536
Alignment:
Q  37 aacaagtatatccacatcggtaccagtatttataatgtaatccaaaacaacaacataatcagcaatatatgactcctcagggtaatgacactgctccaaa 136  Q
    |||||||||| || ||||  |||| |||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  2937870 aacaagtatacccgcatccttaccggtatttataaggtaatccaaaacaacaacataatcagcaatatatgactcatgagggtaatgacactgctccaaa 2937771  T
Q  137 gcaaccatattccgaaataaagtttcggtcgaatcctgaacttttaattgaggaatttcaagaactcctccagattttgaaaacctcaagtcaagtaaac 236  Q
    ||||||||||||| ||| ||| ||||||||||||||| |||| ||||||||||||||||||||||||||||      |||||| ||||||||||||||||    
T  2937770 gcaaccatattccaaaacaaaatttcggtcgaatcctcaactgttaattgaggaatttcaagaactcctcc------tgaaaatctcaagtcaagtaaac 2937677  T
Q  237 acttacttttagtgctcgctttaaacctaactccagcttctaacaactcagttgcactcggtagatgtatcatccgttcttcggtcgcgttactactcgg 336  Q
    | ||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||| |||| |  ||||||||    
T  2937676 aattactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgtattatctgttcgtcgatcgcttctctactcgg 2937577  T
Q  337 gcgaatttcaataggaagttgcaaatgaaatatcctaatca 377  Q
     ||| ||||||||||| ||||||||||||||||||||||||    
T  2937576 ccgactttcaataggatgttgcaaatgaaatatcctaatca 2937536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 7 - 304
Target Start/End: Complemental strand, 2927600 - 2927309
Alignment:
Q  7 tccaagaatattatccagtatatccctccgaacaagtatatccacatcggtaccagtatttataatgtaatccaaaacaacaacataatcagcaatatat 106  Q
    |||||| ||||| |||||||| |||||| |||||||||||||||||||  ||||||||||||||| |||||||||||||  |  |||||||| |||||||    
T  2927600 tccaagcatattttccagtatttccctctgaacaagtatatccacatccttaccagtatttataaggtaatccaaaacagaacgataatcagtaatatat 2927501  T
Q  107 gactcctcagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctgaacttttaattgaggaatttcaagaactcctc 206  Q
    || || |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2927500 gaatcatcagggtaatgacactgctccaaagcaaccatattccgtaataaagtttcagtcgaatcctgaacttttaattgaggaatttcaagaactcctc 2927401  T
Q  207 cagattttgaaaacctcaagtcaagtaaacacttacttttagtgctcgctttaaacctaactccagcttctaacaactcagttgcactcggtagatgt 304  Q
    |       ||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2927400 c------cgaaaacctcaagtcaagtaaacacttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgt 2927309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 7 - 377
Target Start/End: Original strand, 3003422 - 3003780
Alignment:
Q  7 tccaagaatattatccagtatatccctccgaacaagtatatccacatcggtaccagtatttataatgtaatccaaaacaacaacataatcagcaatatat 106  Q
    |||||| ||||| |||||||| || ||| |||||||||||||||||||  || |||||||||||| |||||||||||||  |  |||||| | |||||||    
T  3003422 tccaagcatattttccagtatttcgctctgaacaagtatatccacatccttagcagtatttataaggtaatccaaaacagaacgataatcggtaatatat 3003521  T
Q  107 gactcctcagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctgaacttttaattgaggaatttcaagaactcctc 206  Q
    || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||  ||||||||||||||||||||||||||    
T  3003522 gaatcatcagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatccgcaactaataattgaggaatttcaagaactcctc 3003621  T
Q  207 cagattttgaaaacctcaagtcaagtaaacacttacttttagtgctcgctttaaacctaactccagcttctaacaactcagttgcactcggtagatgtat 306  Q
    |       ||||||||||||||||||||||||||||||| |||| || ||||||| |||||||||||||||||||||||||||||||||||| ||||| |    
T  3003622 c------cgaaaacctcaagtcaagtaaacacttactttcagtgttcactttaaatctaactccagcttctaacaactcagttgcactcggtggatgttt 3003715  T
Q  307 catccgttcttcggtcgcgttactactcgggcgaatttcaataggaagttgcaaatgaaatatcctaatca 377  Q
    ||||| ||| || | |      |||||||| ||| ||||||||||| ||||||||||||||||||||||||    
T  3003716 catccattc-tctgac-----tctactcggccgactttcaataggatgttgcaaatgaaatatcctaatca 3003780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 7 - 377
Target Start/End: Complemental strand, 2964949 - 2964585
Alignment:
Q  7 tccaagaatattatccagtatatccctccgaacaagtatatccacatcggtaccagtatttataatgtaatccaaaacaacaacataatcagcaatatat 106  Q
    |||||| ||||| |||||||| |   || |||||||||||||||||||  | ||||||||||||| ||||||||||||| ||||||| |||| |||||||    
T  2964949 tccaagcatattttccagtattttgttctgaacaagtatatccacatccttgccagtatttataaggtaatccaaaacagcaacatagtcagtaatatat 2964850  T
Q  107 gactcctcagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctgaacttttaattgaggaatttcaagaactcctc 206  Q
    ||||| | ||||||| ||||||||||||||||||||||||||||||| | | ||||||||  ||| ||| || |||||||||||||||||||||||||||    
T  2964849 gactcataagggtaacgacactgctccaaagcaaccatattccgaaacataatttcggtcccatcgtgagctattaattgaggaatttcaagaactcctc 2964750  T
Q  207 cagattttgaaaacctcaagtcaagtaaacacttacttttagtgctcgctttaaacctaactccagcttctaacaactcagttgcactcggtagatgtat 306  Q
    |       ||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2964749 c------cgaaaacctcaagtcaagtaaacacttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactaggtagatgtat 2964656  T
Q  307 catccgttcttcggtcgcgttactactcgggcgaatttcaataggaagttgcaaatgaaatatcctaatca 377  Q
     ||| |||  | | |   ||  |||||||| ||| ||||||||||| ||||||||||||||||||||||||    
T  2964655 tatctgtttgttgatgttgtctctactcggccgattttcaataggatgttgcaaatgaaatatcctaatca 2964585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 22 - 377
Target Start/End: Complemental strand, 2974432 - 2974083
Alignment:
Q  22 cagtatatccctccgaacaagtatatccacatcggtaccagtatttataatgtaatccaaaacaacaacataatcagcaatatatgactcctcagggtaa 121  Q
    ||||||||  ||||||||||||||||||||||| |||| ||||||||||| ||||||||||| || |  |||||||  |||||||||||  | |||||||    
T  2974432 cagtatattgctccgaacaagtatatccacatccgtactagtatttataaggtaatccaaaataaaatgataatcaataatatatgactgataagggtaa 2974333  T
Q  122 tgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctgaacttttaattgaggaatttcaagaactcctccagattttgaaaacc 221  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||  ||| |||||| ||||||||||||||||||||||||||||       |||||||    
T  2974332 tgacactgctccaaagcaaccatattccgaaacaaaatttcggtcccatcttgaactgttaattgaggaatttcaagaactcctcc------cgaaaacc 2974239  T
Q  222 tcaagtcaagtaaacacttacttttagtgctcgctttaaacctaactccagcttctaacaactcagttgcactcggtagatgtatcatccgttcttcggt 321  Q
    |||||||| ||||||| | |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||| ||| |    
T  2974238 tcaagtcatgtaaacattcacttttagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgtattatttgttcatcgat 2974139  T
Q  322 cgcgttactactcgggcgaatttcaataggaagttgcaaatgaaatatcctaatca 377  Q
    |   |  |||||||| | | ||||||||||| ||| ||||||||||||||||||||    
T  2974138 ctgctctctactcggcctactttcaataggatgtttcaaatgaaatatcctaatca 2974083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 9 - 377
Target Start/End: Complemental strand, 2935037 - 2934675
Alignment:
Q  9 caagaatattatccagtatatccctccgaacaagtatatccacatcggtaccagtatttataatgtaatccaaaacaacaacataatcagcaatatatga 108  Q
    |||| ||||||| |||||| ||  ||||||||||||||||  |||| |||||||||||||||| ||||||||  ||| ||||||||||||  ||||||||    
T  2935037 caagcatattatgcagtatttcgttccgaacaagtatatcagcatccgtaccagtatttataaggtaatccatgacagcaacataatcagtgatatatga 2934938  T
Q  109 ctcctcagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctgaacttttaattgaggaatttcaagaactcctcca 208  Q
     || ||||||||||||||||||||||||||||||||||| |||||  || |||| |||  ||| | |||  ||||||||||||||||||||||||||||     
T  2934937 atcatcagggtaatgacactgctccaaagcaaccatatttcgaaacgaaatttcagtcctatcgtcaaccgttaattgaggaatttcaagaactcctcc- 2934839  T
Q  209 gattttgaaaacctcaagtcaagtaaacacttacttttagtgctcgctttaaacctaactccagcttctaacaactcagttgcactcggtagatgtatca 308  Q
          |||||||||||||||||||||||||||||||||||  || |||||||||||||||||||||||||||| ||||||||||  ||||||  ||||     
T  2934838 -----cgaaaacctcaagtcaagtaaacacttacttttagtattcactttaaacctaactccagcttctaacaattcagttgcaccgggtagacttatct 2934744  T
Q  309 tccgttcttcggtcgcgttactactcgggcgaatttcaataggaagttgcaaatgaaatatcctaatca 377  Q
    || |||| |||  |  ||  |||||||| ||| ||||||||||| ||||||||||||||||||||||||    
T  2934743 tctgttcgtcgaacatgtctctactcggccgactttcaataggatgttgcaaatgaaatatcctaatca 2934675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 40 - 377
Target Start/End: Complemental strand, 2983273 - 2982939
Alignment:
Q  40 aagtatatccacatcggtaccagtatttataatgtaatccaaaacaacaacataatcagcaatatatgactcctcagggtaatgacactgctccaaagca 139  Q
    ||||| |||||||||  ||||| ||||||||| |||||||||||||| ||||||||||  |||||||||||| | |||||||||||| ||||||||||||    
T  2983273 aagtacatccacatccttaccattatttataaggtaatccaaaacaagaacataatcaagaatatatgactcatgagggtaatgacaatgctccaaagca 2983174  T
Q  140 accatattccgaaataaagtttcggtcg---aatcctgaacttttaattgaggaatttcaagaactcctccagattttgaaaacctcaagtcaagtaaac 236  Q
    | |||||||||||| ||| |||||||||    ||| |||||| ||||||||||||||||||||||||||||       |||||||||||||||  |||||    
T  2983173 atcatattccgaaacaaaatttcggtcgtccgatcatgaactattaattgaggaatttcaagaactcctcc------cgaaaacctcaagtcatataaac 2983080  T
Q  237 acttacttttagtgctcgctttaaacctaactccagcttctaacaactcagttgcactcggtagatgtatcatccgttcttcggtcgcgttactactcgg 336  Q
    |||||||||||||  || ||| |||||||||||||||||||| ||||| ||||||| || ||| |||||| ||||||| |||| ||  |   ||||||||    
T  2983079 acttacttttagttttcacttgaaacctaactccagcttctaccaactgagttgcagtctgtatatgtattatccgtttttcgatcttgactctactcgg 2982980  T
Q  337 gcgaatttcaataggaagttgcaaatgaaatatcctaatca 377  Q
     ||| ||||||||||| ||||||||||||||||||||||||    
T  2982979 ccgactttcaataggatgttgcaaatgaaatatcctaatca 2982939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 36 - 311
Target Start/End: Original strand, 2997040 - 2997309
Alignment:
Q  36 gaacaagtatatccacatcggtaccagtatttataatgtaatccaaaacaacaacataatcagcaatatatgactcctcagggtaatgacactgctccaa 135  Q
    ||||||||||||| |||||  ||||||| ||||||| |||||||||||||  ||||||||||| ||||||| |||  | || ||||||| ||||||||||    
T  2997040 gaacaagtatatcaacatccttaccagtgtttataaggtaatccaaaacagaaacataatcagtaatatataacttgttagtgtaatgaaactgctccaa 2997139  T
Q  136 agcaaccatattccgaaataaagtttcggtcgaatcctgaacttttaattgaggaatttcaagaactcctccagattttgaaaacctcaagtcaagtaaa 235  Q
    ||||||||||||||||||||||| |||||||  ||||| |||  ||||   |||||||||||||||| ||||       |||||||||||||||||||||    
T  2997140 agcaaccatattccgaaataaagcttcggtccgatcctcaacaattaacgaaggaatttcaagaacttctcc------cgaaaacctcaagtcaagtaaa 2997233  T
Q  236 cacttacttttagtgctcgctttaaacctaactccagcttctaacaactcagttgcactcggtagatgtatcatcc 311  Q
    ||||| ||||||||| || |||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||    
T  2997234 cacttgcttttagtgttcactttaaacttaactccagcttctaacaactcagttgcacttggtagatgtaacatcc 2997309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 57 - 306
Target Start/End: Complemental strand, 2929699 - 2929456
Alignment:
Q  57 taccagtatttataatgtaatccaaaacaacaacataatcagcaatatatgactcctcagggtaatgacactgctccaaagcaaccatattccgaaataa 156  Q
    |||||||||||||||   |||||| || |  ||||||||||  |||||||||||| | |||||||||| ||||||||||||||| |||||||| ||||||    
T  2929699 taccagtatttataagaaaatccataatagtaacataatcaagaatatatgactcatgagggtaatgaaactgctccaaagcaatcatattccaaaataa 2929600  T
Q  157 agtttcggtcgaatcctgaacttttaattgaggaatttcaagaactcctccagattttgaaaacctcaagtcaagtaaacacttacttttagtgctcgct 256  Q
    ||||||||||  |||   |||| ||||||||||||||||||||||||||||      ||||||||| ||||||||||||||||||||||||||| || ||    
T  2929599 agtttcggtcccatctgcaactgttaattgaggaatttcaagaactcctcc------tgaaaaccttaagtcaagtaaacacttacttttagtgttcact 2929506  T
Q  257 ttaaacctaactccagcttctaacaactcagttgcactcggtagatgtat 306  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  2929505 ttaaacctaactccagcttctaacaactcagttgcactccgtagttgtat 2929456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 143 - 292
Target Start/End: Complemental strand, 2978550 - 2978408
Alignment:
Q  143 atattccgaaataaagtttcggtcgaatcctgaacttttaattgaggaatttcaagaactcctccagattttgaaaacctcaagtcaagtaaacacttac 242  Q
    |||| |||||| ||| ||||||||  ||||| |||| |||||||||||||||||||||||||||| ||      ||||||||| ||||||||||||| ||    
T  2978550 atataccgaaacaaaatttcggtcccatcctcaactcttaattgaggaatttcaagaactcctcccga------aaacctcaaatcaagtaaacactcac 2978457  T
Q  243 ttttagtgctcgctttaaacctaactccagcttctaacaactcagttgca 292  Q
    |||||||| || |||||||||||| ||||||||||||||| |||||||||    
T  2978456 ttttagtgttcactttaaacctaa-tccagcttctaacaattcagttgca 2978408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 7 - 146
Target Start/End: Complemental strand, 2979328 - 2979192
Alignment:
Q  7 tccaagaatattatccagtatatccctccgaacaagtatatccacatcggtaccagtatttataatgtaatccaaaacaacaacataatcagcaatatat 106  Q
    |||||| | ||| |||||||| |  ||||||||||||||||||||||| ||||| |||||||||| |||||| || ||||||   ||||||| |||||||    
T  2979328 tccaagcaaattttccagtattttgctccgaacaagtatatccacatccgtaccggtatttataaggtaatcgaagacaaca---taatcagtaatatat 2979232  T
Q  107 gactcctcagggtaatgacactgctccaaagcaaccatat 146  Q
    ||||| | |||||||| |||||||||||||||||||||||    
T  2979231 gactcatgagggtaataacactgctccaaagcaaccatat 2979192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 377
Target Start/End: Complemental strand, 2927281 - 2927233
Alignment:
Q  329 ctactcgggcgaatttcaataggaagttgcaaatgaaatatcctaatca 377  Q
    |||||||| ||| ||||||||||| |||||||||||||||||| |||||    
T  2927281 ctactcggccgactttcaataggatgttgcaaatgaaatatccgaatca 2927233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 248
Target Start/End: Complemental strand, 2954580 - 2954546
Alignment:
Q  214 tgaaaacctcaagtcaagtaaacacttacttttag 248  Q
    |||||||||||||||||||||||||| ||||||||    
T  2954580 tgaaaacctcaagtcaagtaaacactcacttttag 2954546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 166; Significance: 9e-89; HSPs: 3)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 33 - 377
Target Start/End: Original strand, 34906 - 35244
Alignment:
Q  33 tccgaacaagtatatccacatcggtaccagtatttataatgtaatccaaaacaacaacataatcagcaatatatgactcctcagggtaatgacactgctc 132  Q
    ||||||||||||||||| ||||  ||||||||||||||| | |||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||    
T  34906 tccgaacaagtatatccgcatccttaccagtatttataaggaaatccaaaacaacaacataatcagtaatatatgactcataagggtaatgacactgctc 35005  T
Q  133 caaagcaaccatattccgaaataaagtttcggtcgaatcctgaacttttaattgaggaatttcaagaactcctccagattttgaaaacctcaagtcaagt 232  Q
    ||||||||||||||||||||| ||| ||||||||  ||||| ||||| |||| ||||||||||||| |||||      ||  ||||||| ||||||||||    
T  35006 caaagcaaccatattccgaaacaaaatttcggtcccatcctcaacttctaatcgaggaatttcaagcactcc------ttccgaaaaccccaagtcaagt 35099  T
Q  233 aaacacttacttttagtgctcgctttaaacctaactccagcttctaacaactcagttgcactcggtagatgtatcatccgttcttcggtcgcgttactac 332  Q
    ||||||| ||||||||   || ||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||| ||| ||  ||  ||||    
T  35100 aaacactcacttttaggcttcacttgaaacctaactccagcttctaacaactgagttgcactcggtagatgtattatctgttcgtcgatcttgtctctac 35199  T
Q  333 tcgggcgaatttcaataggaagttgcaaatgaaatatcctaatca 377  Q
    | ||  || ||||||||||| ||||||||||||||||||||||||    
T  35200 ttggctgactttcaataggatgttgcaaatgaaatatcctaatca 35244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 7 - 248
Target Start/End: Original strand, 44569 - 44804
Alignment:
Q  7 tccaagaatattatccagtatatccctccgaacaagtatatccacatcggtaccagtatttataatgtaatccaaaacaacaacataatcagcaatatat 106  Q
    |||||| | ||| |||||||| |  ||||||||| |||||||  ||||  ||||||||||||||| ||||||||||| | ||||||||| |  |||||||    
T  44569 tccaagcaaattttccagtattttgctccgaacatgtatatctgcatccttaccagtatttataaggtaatccaaaatagcaacataattaataatatat 44668  T
Q  107 gactcctcagggtaatgacactgctccaaagcaaccatattccgaaataaagtttc-ggtcgaatcctgaacttttaattgaggaatttcaagaactcct 205  Q
    || || | |||||||||| ||| ||||| |||||||||||| | ||| ||| |||| ||| | ||| | | || ||||||||||||||||||||||||      
T  44669 gattcattagggtaatgatactactccatagcaaccatatttcaaaacaaaatttcaggttg-atcatcagctcttaattgaggaatttcaagaactc-- 44765  T
Q  206 ccagattttgaaaacctcaagtcaagtaaacacttacttttag 248  Q
         || |||||||||||| ||||||||||||| ||||||||    
T  44766 ----tttctgaaaacctcaaatcaagtaaacactcacttttag 44804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 292
Target Start/End: Original strand, 45120 - 45168
Alignment:
Q  244 tttagtgctcgctttaaacctaactccagcttctaacaactcagttgca 292  Q
    ||||||| || ||| |||||||||||||||||||||||||||| |||||    
T  45120 tttagtggtcacttgaaacctaactccagcttctaacaactcatttgca 45168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 37 - 291
Target Start/End: Complemental strand, 3339435 - 3339187
Alignment:
Q  37 aacaagtatatccacatcggtaccagtatttataatgtaatccaaaacaacaacataatcagcaatatatgactcctcagggtaatgacactgctccaaa 136  Q
    ||||||||||||||||||  ||| ||||||||||| | ||||||||| | |||||||||||  |||||||||||| ||||||||||||||||||||||||    
T  3339435 aacaagtatatccacatccatactagtatttataaggaaatccaaaaaagcaacataatcaataatatatgactcatcagggtaatgacactgctccaaa 3339336  T
Q  137 gcaaccatattccgaaataaagtttcggtcgaatcctgaacttttaattgaggaatttcaagaactcctccagattttgaaaacctcaagtcaagtaaac 236  Q
    ||||||||||||||||| ||| ||||||||  ||| | |||| ||||||||||||||||||||||||||||       |||||||||||| |||||||||    
T  3339335 gcaaccatattccgaaacaaaatttcggtcccatcgtcaactgttaattgaggaatttcaagaactcctcc------cgaaaacctcaagccaagtaaac 3339242  T
Q  237 acttacttttagtgctcgctttaaacctaactccagcttctaacaactcagttgc 291  Q
    ||| |||||||||| || |||||||||||||||| ||||||||||||||||||||    
T  3339241 actcacttttagtgttcactttaaacctaactcctgcttctaacaactcagttgc 3339187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 343 - 377
Target Start/End: Complemental strand, 3339129 - 3339095
Alignment:
Q  343 ttcaataggaagttgcaaatgaaatatcctaatca 377  Q
    |||||||||| ||||||||||||||||||||||||    
T  3339129 ttcaataggatgttgcaaatgaaatatcctaatca 3339095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 36 - 309
Target Start/End: Complemental strand, 49613847 - 49613580
Alignment:
Q  36 gaacaagtatatccacatcggtaccagtatttataatgtaatccaaaacaacaacataatcagcaatatatgactcctcagggtaatgacactgctccaa 135  Q
    |||||||||||||||||||  | |||||||| |||| | ||||||||||| |||||||||| | ||| || |||||   |||||| ||||| ||||||||    
T  49613847 gaacaagtatatccacatccttgccagtattaataaggaaatccaaaacagcaacataatccgtaatgtaggactcactagggtagtgacattgctccaa 49613748  T
Q  136 agcaaccatattccgaaataaagtttcggtcgaatcctgaacttttaattgaggaatttcaagaactcctccagattttgaaaacctcaagtcaagtaaa 235  Q
    |||||||||||||||||| ||| |||| ||| |||||| |||||| |||||||||||||||||||| | |||      |||||||||||| |||||||||    
T  49613747 agcaaccatattccgaaacaaaatttcagtccaatcctcaactttcaattgaggaatttcaagaacccgtcc------tgaaaacctcaaatcaagtaaa 49613654  T
Q  236 cacttacttttagtgctcgctttaaacctaactccagcttctaacaactcagttgcactcggtagatgtatcat 309  Q
    |||| |||||||||| || |||||||||| || ||||||||||||||||||||||||||| |||||||| ||||    
T  49613653 cactcacttttagtgttcactttaaacctcaccccagcttctaacaactcagttgcactctgtagatgtttcat 49613580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 9 - 309
Target Start/End: Complemental strand, 49618850 - 49618568
Alignment:
Q  9 caagaatattatccagtatatccctccgaacaagtatatccacatcggtaccagtatttataatgtaatccaaaacaacaacataatcagcaatatatga 108  Q
    |||| ||||||||| ||||  | ||| |||||||||||||| ||||  ||||  ||||||||| |||||||||||||  || |||||||  |||||| ||    
T  49618850 caagcatattatcctgtattcctctctgaacaagtatatccgcatccctaccgatatttataaggtaatccaaaacagaaatataatcataaatatagga 49618751  T
Q  109 ctcctcagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctgaacttttaattgaggaatttcaagaactcctcca 208  Q
     || | ||||||||||           |||||||||||||| |||||||||| |||||   |||| |||| |||||||||||||||||||||||| |||     
T  49618750 atcatgagggtaatga-----------agcaaccatattcc-aaataaagttacggtccggtcctcaactcttaattgaggaatttcaagaactcgtccg 49618663  T
Q  209 gattttgaaaacctcaagtcaagtaaacacttacttttagtgctcgctttaaacctaactccagcttctaacaactcagttgcactcggtagatgtatca 308  Q
    ||      |||||||||||||||||||||  || |||||||| || |||||||||||||||||||||||||||||||||| |  || ||||||| |||||    
T  49618662 ga------aaacctcaagtcaagtaaacatgtagttttagtgttcactttaaacctaactccagcttctaacaactcagtggtgctgggtagatatatca 49618569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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