View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17489_low_3 (Length: 251)
Name: NF17489_low_3
Description: NF17489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17489_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 235
Target Start/End: Complemental strand, 53065930 - 53065715
Alignment:
| Q |
20 |
gctgtgtttgcatttgatcaaataacctcagcttatggttgtttcttctcttgtttcatatggaataataaacagtctataacaagatgaaagatataga |
119 |
Q |
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| T |
53065930 |
gctgtgtttgcatttgatcaaataacctcagcttatggttgtttcttctcttgtttcatatggaataataaacagtctataacaagctgaaagatataga |
53065831 |
T |
|
| Q |
120 |
tacaatagacctcaagtggagtccaattctacctgatgaggcaagtttttctcttaaagtttcataaatttagtttctatgtgcatattttaattcttta |
219 |
Q |
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||||||||||||||||||| |||||||| |||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
53065830 |
tacaatagacctcaagtggtgtccaattatacccgataaggcaagtttttctcttaaactttcataaatttagtttctatgtgcatattttaattattta |
53065731 |
T |
|
| Q |
220 |
ggatcaatgtctctct |
235 |
Q |
| |
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|||||||||||||||| |
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| T |
53065730 |
ggatcaatgtctctct |
53065715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 27 - 223
Target Start/End: Original strand, 53331401 - 53331597
Alignment:
| Q |
27 |
ttgcatttgatcaaataacctcagcttatggttgtttcttctcttgtttcatatggaataataaacagtctataacaagatgaaagatatagatacaata |
126 |
Q |
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||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
53331401 |
ttgcatttggtcaaataacctcagcttatggttgtttattctcttgtttcatatggaataataaacagtctataacaagctgaaagatatagatacaata |
53331500 |
T |
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| Q |
127 |
gacctcaagtggagtccaattctacctgatgaggcaagtttttctcttaaagtttcataaatttagtttctatgtgcatattttaattctttaggat |
223 |
Q |
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| T |
53331501 |
gacctcaagtggtgtccaattatacccgataaggcaagtttttctcttaaactttcataaatttagtttctatgtgcatattttaattctttaggat |
53331597 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 27 - 223
Target Start/End: Original strand, 53335085 - 53335281
Alignment:
| Q |
27 |
ttgcatttgatcaaataacctcagcttatggttgtttcttctcttgtttcatatggaataataaacagtctataacaagatgaaagatatagatacaata |
126 |
Q |
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||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
53335085 |
ttgcatttggtcaaataacctcagcttatggttgtttattctcttgtttcatatggaataataaacagtctataacaagctgaaagatatagatacaata |
53335184 |
T |
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| Q |
127 |
gacctcaagtggagtccaattctacctgatgaggcaagtttttctcttaaagtttcataaatttagtttctatgtgcatattttaattctttaggat |
223 |
Q |
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|||||||||||| |||||||| |||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53335185 |
gacctcaagtggtgtccaattatacccgataaggcaagtttttctcttaaactttcataaatttagtttctatgtgcatattttaattctttaggat |
53335281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 27 - 223
Target Start/End: Original strand, 53338762 - 53338958
Alignment:
| Q |
27 |
ttgcatttgatcaaataacctcagcttatggttgtttcttctcttgtttcatatggaataataaacagtctataacaagatgaaagatatagatacaata |
126 |
Q |
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||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
53338762 |
ttgcatttggtcaaataacctcagcttatggttgtttattctcttgtttcatatggaataataaacagtctataacaagctgaaagatatagatacaata |
53338861 |
T |
|
| Q |
127 |
gacctcaagtggagtccaattctacctgatgaggcaagtttttctcttaaagtttcataaatttagtttctatgtgcatattttaattctttaggat |
223 |
Q |
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|||||||||||| |||||||| |||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53338862 |
gacctcaagtggtgtccaattatacccgataaggcaagtttttctcttaaactttcataaatttagtttctatgtgcatattttaattctttaggat |
53338958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 93 - 223
Target Start/End: Original strand, 53356799 - 53356929
Alignment:
| Q |
93 |
agtctataacaagatgaaagatatagatacaatagacctcaagtggagtccaattctacctgatgaggcaagtttttctcttaaagtttcataaatttag |
192 |
Q |
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||||||||| ||| |||||||||||||||||||||||||||||||| |||||||| |||| ||| |||||||||||||||||||| |||||| ||||||| |
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| T |
53356799 |
agtctataataagctgaaagatatagatacaatagacctcaagtggtgtccaattatacccgataaggcaagtttttctcttaaactttcatgaatttag |
53356898 |
T |
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| Q |
193 |
tttctatgtgcatattttaattctttaggat |
223 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
53356899 |
tttctatgtgcatattttaattctttaggat |
53356929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 53072921 - 53072870
Alignment:
| Q |
20 |
gctgtgtttgcatttgatcaaataacctcagcttatggttgtttcttctctt |
71 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53072921 |
gctgtgtttgcatttgatcaaataacctcagcttatggttgtttcttctctt |
53072870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 189 - 235
Target Start/End: Complemental strand, 53072871 - 53072825
Alignment:
| Q |
189 |
ttagtttctatgtgcatattttaattctttaggatcaatgtctctct |
235 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53072871 |
ttagtttctatgtgcatattttaattctttaggatcaatgtctctct |
53072825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 4382914 - 4382957
Alignment:
| Q |
176 |
aagtttcataaatttagtttctatgtgcatattttaattcttta |
219 |
Q |
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|||||||| ||||| ||||||||||||||||||| ||||||||| |
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| T |
4382914 |
aagtttcacaaattcagtttctatgtgcatatttgaattcttta |
4382957 |
T |
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