View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17489_low_5 (Length: 247)
Name: NF17489_low_5
Description: NF17489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17489_low_5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 34944533 - 34944626
Alignment:
| Q |
154 |
caaaaactatatggaattggtgatagtggccgggcccgaagcaaagagctagcacgacatgactccatttttatttgggttaaaaacaaataat |
247 |
Q |
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| T |
34944533 |
caaaaactatatggaattgttgatagtggccgggcccgaagcaaagagctagcacgacatgactccatttttatttgggttaaaaacaaataat |
34944626 |
T |
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