View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1748_high_13 (Length: 305)
Name: NF1748_high_13
Description: NF1748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1748_high_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 298
Target Start/End: Complemental strand, 53676243 - 53675957
Alignment:
| Q |
19 |
caaccttgcaaggtttggtagttagagacagaaatattttccactttatcatccatcagaaaaagagaaaacagttagtgtcctctcaaagtttcattga |
118 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53676243 |
caaccttgcaaggtttgat--ttagagacagaaatattttccactttatcatccatcagaaaaagagaaaacagttagtgtcctctcaaagtttcattga |
53676146 |
T |
|
| Q |
119 |
tgataaagtgatgactgtaactannnnnnncaagaattgcaaatagtccaacaagctttcctaccaactggaagt---------aaaactaaaaataata |
209 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
53676145 |
tgataaagtgatgaatgtaactatttttttcaagaattgcaaatagtccaacaagctttcctaccaactggaagtaaaaaaaaaaaaactaaaaataata |
53676046 |
T |
|
| Q |
210 |
aaggcacaaaattttgtaaaaaggaggttcatttttggcttatataacaagacaagataaaatgatatacatgcccaccacctttgctt |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53676045 |
aaggcacaaaattttgtaaaaaggaggttcatttttggcttatataacaagacaagataaaatgatatacatgcccaccacctttgctt |
53675957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University