View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1748_high_16 (Length: 276)
Name: NF1748_high_16
Description: NF1748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1748_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 98 - 259
Target Start/End: Complemental strand, 49425511 - 49425350
Alignment:
| Q |
98 |
aagcagcaagaacaccagcaccaacaacttccttgttcttcttctcagcaatcttcgaaatcagcttagtcttaacaacaaaaggttgattatgaggcaa |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
49425511 |
aagcagcaagaacaccagcaccaacaacttccttgttcttcttctcagcaatcttcgaaatcagcttagtcttaacaacaaaaggttgattctgaggcaa |
49425412 |
T |
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| Q |
198 |
aacatattttccaagaacttaaagtacccaaattaagtaacatcaatcacaggagctttgtt |
259 |
Q |
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| T |
49425411 |
aacatattttccaagaacttaaagtacccaaattaagtaacatcaatcacaggacctttgtt |
49425350 |
T |
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Target: chr3 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 98 - 256
Target Start/End: Complemental strand, 34602006 - 34601847
Alignment:
| Q |
98 |
aagcagcaagaacaccagcaccaacaacttccttgttcttcttctcagcaatcttcgaaatcagcttagtcttaacaacaaaaggttgattatgaggcaa |
197 |
Q |
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|||||| ||||||| |||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
34602006 |
aagcagtaagaacaacagcaccaccagcttccttgatcttcttctcagcaatcttcgaaatcagcttagtcttaacaacaaaaggctgattctgaggcaa |
34601907 |
T |
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| Q |
198 |
aacatattttccaagaa-cttaaagtacccaaattaagtaacatcaatcacaggagcttt |
256 |
Q |
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|||| ||||||||||| ||||||| | ||||| | ||| |||||||||| ||||||||| |
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| T |
34601906 |
aacaccttttccaagaagcttaaagaatccaaactgagtgacatcaatcataggagcttt |
34601847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 98 - 259
Target Start/End: Complemental strand, 14261376 - 14261214
Alignment:
| Q |
98 |
aagcagcaagaacaccagcaccaacaacttccttgttcttcttctcagcaatcttcgaaatcagcttagtcttaacaacaaaaggttgattatgaggcaa |
197 |
Q |
| |
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|||||| ||||||| |||||||| || ||||||| |||||||||| |||||||||||||||||||| ||||| ||||||||||| ||||| || ||||| |
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| T |
14261376 |
aagcagtaagaacaacagcaccaccagcttccttaatcttcttctccgcaatcttcgaaatcagcttcgtcttcacaacaaaaggctgattctgcggcaa |
14261277 |
T |
|
| Q |
198 |
aacatattttcc-aagaacttaaagtacccaaattaagtaacatcaatcacaggagctttgtt |
259 |
Q |
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|||| ||| || || | |||||| ||||||| | ||||||||||||||| || |||||||| |
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| T |
14261276 |
aacacctttccctaaaagcttaaaaaacccaaactgagtaacatcaatcaccggcgctttgtt |
14261214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 98 - 198
Target Start/End: Original strand, 31889907 - 31890012
Alignment:
| Q |
98 |
aagcagcaagaacaccagcaccaacaacttccttg---ttcttcttctcagcaatcttcgaaatcagcttagtcttaac--aacaaaaggttgattatga |
192 |
Q |
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||||||||||||||||| |||||||| ||||||| |||||||||| ||||||||| |||||||||| ||||||||| || |||||| ||||| ||| |
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| T |
31889907 |
aagcagcaagaacaccaacaccaacagtttccttgatcttcttcttcttagcaatctttgaaatcagctcagtcttaacaaaaaaaaaggctgattctga |
31890006 |
T |
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| Q |
193 |
ggcaaa |
198 |
Q |
| |
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|||||| |
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|
| T |
31890007 |
ggcaaa |
31890012 |
T |
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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 178
Target Start/End: Complemental strand, 29101940 - 29101860
Alignment:
| Q |
98 |
aagcagcaagaacaccagcaccaacaacttccttgttcttcttctcagcaatcttcgaaatcagcttagtcttaacaacaa |
178 |
Q |
| |
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|||||| ||||| | |||||||| || ||||||| |||||||||| ||||||||||||| |||||| | ||||||||||| |
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| T |
29101940 |
aagcagtaagaagaacagcaccaccagcttccttaatcttcttctccgcaatcttcgaaaccagcttcgccttaacaacaa |
29101860 |
T |
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