View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1748_high_17 (Length: 275)
Name: NF1748_high_17
Description: NF1748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1748_high_17 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 14 - 261
Target Start/End: Complemental strand, 6621275 - 6621028
Alignment:
| Q |
14 |
cagttttcacaatgtcattacttactttaaagaaaagcctccattaatgaagttaggcttattgatatttttgagttgtttgagaagatcatttctgttg |
113 |
Q |
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| T |
6621275 |
cagttttcacaatgtcattacttacttttaagtaaagcctccattaatgaagttaggcttattgttattgttgagttgtttgcgaagatcatttctgttg |
6621176 |
T |
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| Q |
114 |
ttttgtctatacaagaagaaactttggacaatgtgtgttgatcttctcccccattattttgttgtgtacacaataagtttaatttgtttgatggttaatg |
213 |
Q |
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| T |
6621175 |
ttttgtctatacaagaagacactttggacaatgtgtgttgatcttctcccccattattttgttgtgtacacaataagtttaatttgtttgatggttaatg |
6621076 |
T |
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| Q |
214 |
aggttcttattcatgtaagaactgcacattagtgatggtagatgcaaa |
261 |
Q |
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| T |
6621075 |
aggttcttattcatgtaagcactgcaaattagtgatggtagatgcaaa |
6621028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 6617223 - 6617276
Alignment:
| Q |
109 |
tgttgttttgtctatacaagaagaaactttggacaatgtgtgttgatcttctcc |
162 |
Q |
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| T |
6617223 |
tgttgttttgtctataaaagaagatactttgaataaggtctgttgatcttctcc |
6617276 |
T |
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