View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1748_high_19 (Length: 252)
Name: NF1748_high_19
Description: NF1748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1748_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 1869849 - 1869626
Alignment:
| Q |
11 |
gcagaacctgtgagagagctagaacaagaagctggatcaaacatttgtagcaacaaaaggaccaaagtgaattcagatgagtacaattgtggaacaagtg |
110 |
Q |
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| T |
1869849 |
gcagaacgtgtgagagagctagaacaagaagctggatcaaacatttgtagcaacaaaaggaccaaagtgaattcagatgagtacaattgtggaacaggtg |
1869750 |
T |
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| Q |
111 |
ataatactcttccagagatcaaagcaagagtgtcnnnnnnngatgtacttgtcatagtccattgtgagaaacaaaagggtatcttgctcaaaatactgac |
210 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1869749 |
ataatactcttccagagatcaaagcaagagtgtcaaaaaaagatgtacttgtcatagtccattgtgagaaacaaaagggtatcttgctcaaaatactgac |
1869650 |
T |
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| Q |
211 |
ccaccttgcaagtcttcatctttc |
234 |
Q |
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|||||||||||||||||||||||| |
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| T |
1869649 |
ccaccttgcaagtcttcatctttc |
1869626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 115 - 234
Target Start/End: Complemental strand, 1916910 - 1916791
Alignment:
| Q |
115 |
tactcttccagagatcaaagcaagagtgtcnnnnnnngatgtacttgtcatagtccattgtgagaaacaaaagggtatcttgctcaaaatactgacccac |
214 |
Q |
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||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || |
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| T |
1916910 |
tactcttccagaggtcaaagcaaaagtgttacaaaaagatgtacttgtcatagtccattgtgagaaacaaaatggtattctgctcaaaatactgacctac |
1916811 |
T |
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| Q |
215 |
cttgcaagtcttcatctttc |
234 |
Q |
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|||| || |||||||||||| |
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| T |
1916810 |
cttgaaaatcttcatctttc |
1916791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 1916988 - 1916916
Alignment:
| Q |
13 |
agaacctgtgagagagctagaacaagaagctggatcaaacatttgtagcaacaaaaggaccaaagtgaattca |
85 |
Q |
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| T |
1916988 |
agaacgtgtgagagagctagaagaagaagctggatccaacatttgtactaacaaaaggaccaaactgagttca |
1916916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 13 - 234
Target Start/End: Complemental strand, 17488694 - 17488473
Alignment:
| Q |
13 |
agaacctgtgagagagctagaacaagaagctggatcaaacatttgtagcaacaaaaggaccaaagtgaattcagatgagtacaattgtggaacaagtgat |
112 |
Q |
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||||| ||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
17488694 |
agaacgtgtgagagagctagaacaagaagatggatccaacatttgtacaaacaaaaggaccaaagtgaattcagatgagtacagttgtggaacaagtgat |
17488595 |
T |
|
| Q |
113 |
aatactcttccagagatcaaagcaagagtgtcnnnnnnngatgtacttgtcatagtccattgtgagaaacaaaagggtatcttgctcaaaatactgaccc |
212 |
Q |
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||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
17488594 |
aatactcttccagaggtcaaagcaaaagtgttacaaaatgatgtacttgtcatagtccattgtgagaaacaaaatggtatcttgctcaaaatactgacct |
17488495 |
T |
|
| Q |
213 |
accttgcaagtcttcatctttc |
234 |
Q |
| |
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||||| || |||||||||||| |
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| T |
17488494 |
gccttgaaaatcttcatctttc |
17488473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 17564520 - 17564741
Alignment:
| Q |
13 |
agaacctgtgagagagctagaacaagaagctggatcaaacatttgtagcaacaaaaggaccaaagtgaattcagatgagtacaattgtggaacaagtgat |
112 |
Q |
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||||| ||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
17564520 |
agaacgtgtgagagagctagaacaagaagatggatccaacatttgtacaaacaaaaggaccaaagtgaattcagatgagtacagttgtggaacaagtgat |
17564619 |
T |
|
| Q |
113 |
aatactcttccagagatcaaagcaagagtgtcnnnnnnngatgtacttgtcatagtccattgtgagaaacaaaagggtatcttgctcaaaatactgaccc |
212 |
Q |
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||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
17564620 |
aatactcttccagaggtcaaagcaaaagtgttacaaaatgatgtacttgtcatagtccattgtgagaaacaaaatggtatcttgctcaaaatactgacct |
17564719 |
T |
|
| Q |
213 |
accttgcaagtcttcatctttc |
234 |
Q |
| |
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||||| || |||||||||||| |
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| T |
17564720 |
gccttgaaaatcttcatctttc |
17564741 |
T |
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