View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1748_high_23 (Length: 226)
Name: NF1748_high_23
Description: NF1748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1748_high_23 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 3148862 - 3148643
Alignment:
| Q |
7 |
cctgaagtctctgaactcctattctctccatgtcctttactaccaacattccataacttgtcaaatattctcctcgaccgagacggcaacaactgcatgc |
106 |
Q |
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| T |
3148862 |
cctgaagtctctgaactcctattctctccatgtcctttactaccaacattccataacttgtcaaatattctcctcgaccgagacggcaacaactgcatgc |
3148763 |
T |
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| Q |
107 |
cacttctgctatttttgctactcttcttatccaatctcaagctcttacgaaactcatcatccttaatcttcaaacgacttgtttgtctgttgagggaatg |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3148762 |
cacttctgctatttttgctactcttcttatccaatctcacgctcttacgaaactcatcatccttaatcttcaaacgacttgtttgtctgttgagggaatg |
3148663 |
T |
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| Q |
207 |
gcagctcactcccagtgttt |
226 |
Q |
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|||||||||||||||||||| |
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| T |
3148662 |
gcagctcactcccagtgttt |
3148643 |
T |
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