View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1748_high_4 (Length: 436)
Name: NF1748_high_4
Description: NF1748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1748_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 21 - 429
Target Start/End: Complemental strand, 43362535 - 43362115
Alignment:
| Q |
21 |
catgaccatcaaggttcacagtagaagtatatagaagtactacttaaataggtgttgaataataacttcacatgtaggagaggcccttggacataaggat |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43362535 |
catgaccatcaaggttcacagtagaagtatatagaagtactacttaaataggtgttgaataataacttcacatgtaggagaggcccttggacataaggac |
43362436 |
T |
|
| Q |
121 |
aattctctttctagtttgagttcgtcactacaatagatttccatggttgcaaaactcttgcattcttcacaatatatattgccaataaaagctcaccttc |
220 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
43362435 |
aattctctttctagtttgagttcgtcactgcaatagatttccatggttgcaaaactcttgcattcttcacaatatatattgccaataaaagctcaccgtc |
43362336 |
T |
|
| Q |
221 |
ttgccctaaaagttcacaagttttaagttgtgatggaaagcattgtggaacaaatattgggtccacccaa------------tctactatgcaactacct |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||| |
|
|
| T |
43362335 |
ttgccctaaaagttcacaagttttaagttgtgatggaaagcattgtggaacaaatattgggtccacccaatctttgacattttctactatccaattacct |
43362236 |
T |
|
| Q |
309 |
ttgcccatcttatccgagaatgatgagaatagatctcaaccattaaataaaaaatgcacagtggagattaaaacatcacattaaaagtcacgtgcaccca |
408 |
Q |
| |
|
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43362235 |
ttgtccatcttatgtgagaatgatgagaatagatctcaaccattaaataaaaaatgcacagttgagattaaaacatcacattaaaagtcacgtgcaccca |
43362136 |
T |
|
| Q |
409 |
attcccacccttgttcatctc |
429 |
Q |
| |
|
|||| ||||||| |||||||| |
|
|
| T |
43362135 |
attctcacccttattcatctc |
43362115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 84 - 223
Target Start/End: Original strand, 49426405 - 49426545
Alignment:
| Q |
84 |
aacttcacatgtaggagaggcccttggacataaggataattctctttctagtttgagttcgtcactacaatagatttccatggtt-gcaaaactcttgca |
182 |
Q |
| |
|
|||||||||| |||| ||||||||||| ||||| |||| ||||| | | ||||||||| | || ||||| ||||| ||||||| |||||||||||||| |
|
|
| T |
49426405 |
aacttcacatataggggaggcccttgggcataataataactctctatatgttttgagttctttaccacaattgattttcatggtttgcaaaactcttgca |
49426504 |
T |
|
| Q |
183 |
ttcttcacaatatatattgccaataaaagctcaccttcttg |
223 |
Q |
| |
|
||||| | ||||| | ||||||||| |||||||| |||||| |
|
|
| T |
49426505 |
ttctttagaatatgttttgccaatagaagctcactttcttg |
49426545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 119 - 291
Target Start/End: Original strand, 17641093 - 17641275
Alignment:
| Q |
119 |
ataattctctttctagtttgagttcgtcactacaatagatttccatggtt-gcaaaactcttgcattcttcacaatatatattgccaataaaagctcacc |
217 |
Q |
| |
|
|||| |||||||||| |||||| || ||||| |||| |||| ||||||| |||||||| |||||||||||| ||| | | ||||||||| |||||| || |
|
|
| T |
17641093 |
ataactctctttctattttgaggtcttcactgcaatgtattttcatggtttgcaaaacttttgcattcttcagaatgtttcttgccaatagaagctcgcc |
17641192 |
T |
|
| Q |
218 |
ttcttgcccta-aaagttca--------caagttttaagttgtgatggaaagcattgtggaacaaatattgggtccacccaat |
291 |
Q |
| |
|
|||||| |||| ||||| | ||| ||||||| ||| ||| ||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
17641193 |
ttcttggcctatgaagtttagaactttgcaaattttaaggtgtaatgaaaaacattgcggaacaaatattgggtccacccaat |
17641275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 82 - 201
Target Start/End: Original strand, 49437751 - 49437871
Alignment:
| Q |
82 |
ataacttcacatgtaggagaggcccttggacataaggataattctctttctagtttgagttcgtcactacaatagatttcca-tggttgcaaaactcttg |
180 |
Q |
| |
|
|||||||||||| |||||||| ||||||| |||||||||||||||||||| | || ||| | | | || | ||||| || || |||||||||||||| |
|
|
| T |
49437751 |
ataacttcacatataggagagacccttgggcataaggataattctctttcaacttcgagagctttaacaccacagattgacattgtttgcaaaactcttg |
49437850 |
T |
|
| Q |
181 |
cattcttcacaatatatattg |
201 |
Q |
| |
|
||||||||| ||||||||||| |
|
|
| T |
49437851 |
cattcttcagaatatatattg |
49437871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 78 - 282
Target Start/End: Complemental strand, 49416182 - 49415963
Alignment:
| Q |
78 |
aataataacttcacatgtaggagaggccc-----ttggacataaggataattctctttctagtttgagttcgtcactacaatagatttccatggtt-gca |
171 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||| || ||| |||||||||| | | |||| | || || || |||| |||| ||||||| ||| |
|
|
| T |
49416182 |
aataataatttcacatgtaggagaggcccggcccttgggcacaagagtaattctcttccgattttggggtcatcgctgcaatgtattttcatggtttgca |
49416083 |
T |
|
| Q |
172 |
aaactcttgcattcttcacaatatatattgccaataaaagctcaccttcttgccctaa-aagttca--------caagttttaagttgtgatggaaagca |
262 |
Q |
| |
|
||||||| |||||||||| ||| ||| ||||||||| |||||| ||||||| ||||| ||||||| ||||||||||||||| ||| || | |
|
|
| T |
49416082 |
aaactctagcattcttcaaaatgtatcttgccaatagaagctcgccttcttcgcctaagaagttcagaagtttgcaagttttaagttgtaatgaaagact |
49415983 |
T |
|
| Q |
263 |
ttgtggaacaaatattgggt |
282 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
49415982 |
ttgtggaacaaatattgggt |
49415963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 223
Target Start/End: Original strand, 49432642 - 49432786
Alignment:
| Q |
80 |
taataacttcacatgtaggagaggcccttggacataaggataattctctttctagtttgagttcgtcactacaatagatttccatggttg-caaaactct |
178 |
Q |
| |
|
|||||||||||||| ||||||| ||||| | |||||| ||| |||||| || || || || | || ||||| ||||| ||||||| ||||||||| |
|
|
| T |
49432642 |
taataacttcacatataggagaagccctatggcataagagtaactctcttaatatttcgaagtctttaccacaatggattttcatggtttacaaaactct |
49432741 |
T |
|
| Q |
179 |
tgcattcttcacaatatatattgccaataaaagctcaccttcttg |
223 |
Q |
| |
|
|| |||||| | ||||||| ||||||||| |||||||| |||||| |
|
|
| T |
49432742 |
tgaattctttagaatatatcttgccaatagaagctcactttcttg |
49432786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 49445344 - 49445394
Alignment:
| Q |
167 |
ttgcaaaactcttgcattcttcacaatatatattgccaataaaagctcacc |
217 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||| | ||||||||| |
|
|
| T |
49445344 |
ttgcaaaactcttgcattcttcaaaatatattttgccatcagaagctcacc |
49445394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 315 - 420
Target Start/End: Original strand, 48718284 - 48718389
Alignment:
| Q |
315 |
atcttatccgagaatgatgagaatagatctcaaccattaaataaaaaatgcacagtggagattaaaacatcacattaaaagtcacgtgcacccaattccc |
414 |
Q |
| |
|
||||||| |||||||||||||||| |||| ||||||||||| |||||||||| || ||||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
48718284 |
atcttatgtgagaatgatgagaataaatcttaaccattaaatgaaaaatgcacggttgagattaaaacatcacattaaaagtcatttgcacccaattctc |
48718383 |
T |
|
| Q |
415 |
accctt |
420 |
Q |
| |
|
|||||| |
|
|
| T |
48718384 |
accctt |
48718389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 399
Target Start/End: Complemental strand, 48718958 - 48718898
Alignment:
| Q |
342 |
tctcaaccattaaataaaaaat---gcacagtggagattaaaacatcacattaaaagtcac |
399 |
Q |
| |
|
|||||| ||||||||||||||| | || || |||||||||||||||||||||||||||| |
|
|
| T |
48718958 |
tctcaagcattaaataaaaaataatgtacggttgagattaaaacatcacattaaaagtcac |
48718898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 399
Target Start/End: Complemental strand, 38367283 - 38367225
Alignment:
| Q |
341 |
atctcaaccattaaataaaaaatgcacagtggagattaaaacatcacattaaaagtcac |
399 |
Q |
| |
|
|||| ||||||||||||||||||||| || |||||||||||||||||||||| |||| |
|
|
| T |
38367283 |
atcttaaccattaaataaaaaatgcatggttaagattaaaacatcacattaaaactcac |
38367225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 389
Target Start/End: Original strand, 38366625 - 38366670
Alignment:
| Q |
344 |
tcaaccattaaataaaaaatgcacagtggagattaaaacatcacat |
389 |
Q |
| |
|
|||||||| |||||||||||||| || |||||||||||||||||| |
|
|
| T |
38366625 |
tcaaccatcaaataaaaaatgcatggttgagattaaaacatcacat |
38366670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 1024755 - 1024808
Alignment:
| Q |
238 |
aagttttaagttgtgatggaaagcattgtggaacaaatattgggtccacccaat |
291 |
Q |
| |
|
||||| |||| |||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
1024755 |
aagttctaaggtgtgataaaaagcattgtggaacaaattctgggtccacccaat |
1024808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University