View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1748_high_5 (Length: 420)
Name: NF1748_high_5
Description: NF1748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1748_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 17 - 404
Target Start/End: Complemental strand, 35627665 - 35627278
Alignment:
| Q |
17 |
tgtgaaattatttagtggtcctgnnnnnnnntatattaatctcaaacatacaagggaggtttctcaggctataaatcaacaccagatatagtttccttta |
116 |
Q |
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| T |
35627665 |
tgtgaaattatttagtggtcctgaaaataaatatattaatctcaaacatacaagggaggtttctcaggctataaatcaacaccagatatagtttccttta |
35627566 |
T |
|
| Q |
117 |
ccatgcaccaattattttgagagtgaaagagcatcatgggatcagaaacagtctctcagataatccctgtcgttgacttgtccgaccaaaacatgaaacc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35627565 |
ccatgcaccaattattttgagagtgaaagagcatcatgggatcagaaacagtctctcagataatccctgtcgttgacttgtccgaccaaaacatgaaacc |
35627466 |
T |
|
| Q |
217 |
tggtactgacacatgggtctcagcttgcaatgttgtgaaaacttcactagaagactatggttgtttcgtggcacactatgataaaattggcaaagaactt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35627465 |
tggtactgacacatgggtctcagcttgcaatgttgtgaaaacttcactagaagactatggttgtttcgtggcacactatgataaaattggcaaagaactt |
35627366 |
T |
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| Q |
317 |
tgtgacaatgttatctttggaattgaagaattcttcaagctccctttggaaacaaaagcgcaaaagataagtgatagacctttccatg |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35627365 |
tgtgacaatgttatctttggaattgaagaattcttcaagctccctttggaaacaaaagcgcaaaagataagtgatagacctttccatg |
35627278 |
T |
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