View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1748_low_1 (Length: 514)
Name: NF1748_low_1
Description: NF1748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1748_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 32 - 509
Target Start/End: Original strand, 6281731 - 6282192
Alignment:
| Q |
32 |
ttttgtacccaataaattaattgacttattacatcaatcaatttaattaaaatttcgctatggtcaataataacaaataagaactctgtccatgctaatt |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
6281731 |
ttttgtacccaataaattaattgacttattacatcaatcaatttaattaaaatttcgctatg-------------------aactctgtcaatgctaatt |
6281811 |
T |
|
| Q |
132 |
a----tatgaacgaatctccttcacatattatattacaatggttcctaagctttctttctaagaatagtagcatgaaatgttctctagtgaaaacgtata |
227 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||| |
|
|
| T |
6281812 |
aattatatgaacgaatctccttcacatattatattacaatggttcctaagctttctttctaagaatagtagtatgaaatgttctcttgtgaaaacggata |
6281911 |
T |
|
| Q |
228 |
taaaggagcaaattgtgaatctcaatttgcacacgtgttgaatactccaatgatttgaaaaactatttatgttcccaacagatacagtgagaaataacca |
327 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||| |
|
|
| T |
6281912 |
tgaaggagcaaattgtgaatctcaatttgcacacatgttgaatactccaatgatttgaaaaactatttaagttcc-aacagacacagtgagaaataacca |
6282010 |
T |
|
| Q |
328 |
tctcaaacatacaaagttcaaacaacactaactctacatttcatattcattaagtttctaaacactttcatagaaaatggactcacaaaagatgagctac |
427 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6282011 |
tctcaaacatacaaagttcaaacaaaactaactctacatttcatattcattaagtttctaaacactttcatagaaaatggactcacaaaagatgagctac |
6282110 |
T |
|
| Q |
428 |
aatgctggacaagccaagggccaaactgaggtctgccttaatgaaatcttactatcgtataatctcttcatttcatctctct |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
6282111 |
aatgctggacaagccaagggccaaactgaggtctgccttaatgaaatctcactatcgtataatctcttcatttcatatctct |
6282192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 459
Target Start/End: Complemental strand, 6226447 - 6226410
Alignment:
| Q |
422 |
agctacaatgctggacaagccaagggccaaactgaggt |
459 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
6226447 |
agctacaatgctggacaggccaagggccaaactcaggt |
6226410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University