View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1748_low_11 (Length: 415)
Name: NF1748_low_11
Description: NF1748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1748_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 156; Significance: 9e-83; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 197 - 401
Target Start/End: Complemental strand, 8705183 - 8704979
Alignment:
| Q |
197 |
ggttgcatttttatgagaaaataatgaagggtttgtttgnnnnnnnacctggtaagtcccaaggttcatagttgcatacatcaacttcagctataacatt |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8705183 |
ggttgcatttttatgagaaaataatgaagggtttgtttgtttttttacctggtaagtcccaaggttcatagttgcatacatcaacttcagctataacatt |
8705084 |
T |
|
| Q |
297 |
gttgacaatggaatcattaccaagtaacnnnnnnnngagatagtggtttacaagctcttcatctgttggtcggaatctgaatccaacaggaacatggtca |
396 |
Q |
| |
|
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8705083 |
gtttacaatggaatcattaccaagtaacttttttttgagatagtggtttacaagctcttcatctgttggtcggaatctgaatccaacaggaacatggtca |
8704984 |
T |
|
| Q |
397 |
agagt |
401 |
Q |
| |
|
||||| |
|
|
| T |
8704983 |
agagt |
8704979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 10 - 164
Target Start/End: Complemental strand, 8705370 - 8705216
Alignment:
| Q |
10 |
aatattattgctacccctaaccttaatcttccggtccttaccagtagctttccaaaaaccagtatttgttgtcctcttaaaccttttactcttagcatac |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8705370 |
aatattattgctacccctaaccttaatcttccggtccttaccagtagctttccaaaaaccagtatttgttgtcctcttaaaccttttactcttggcatac |
8705271 |
T |
|
| Q |
110 |
ttataatcaataggacacnnnnnnnnccattctgggtcatctgattttacaaccg |
164 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8705270 |
ttataatcaataggacacaaaaaaaaccattctgggtcatctgattttacaaccg |
8705216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 243 - 389
Target Start/End: Complemental strand, 8690865 - 8690719
Alignment:
| Q |
243 |
acctggtaagtcccaaggttcatagttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaagtaacnnnnnnnngagatagtgg |
342 |
Q |
| |
|
||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8690865 |
acctggtaaatcccaaggttcgaacttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaagtaacttttttttgagatagtgg |
8690766 |
T |
|
| Q |
343 |
tttacaagctcttcatctgttggtcggaatctgaatccaacaggaac |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8690765 |
tttacaagctcttcatctgttggtcggaatctgaatccaacaggaac |
8690719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 10 - 159
Target Start/End: Original strand, 14372357 - 14372506
Alignment:
| Q |
10 |
aatattattgctacccctaaccttaatcttccggtccttaccagtagctttccaaaaaccagtatttgttgtcctcttaaaccttttactcttagcatac |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
14372357 |
aatattattgctacccctaaccttaatcttccggtcctttccagtagctttccaaaaaccattttttgttgtccttttaaaccttttactctttgcatac |
14372456 |
T |
|
| Q |
110 |
ttataatcaataggacacnnnnnnnnccattctgggtcatctgattttac |
159 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
14372457 |
ttgtaatcaataggacacaagaaaaaccattctgggtcatctgattttac |
14372506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 243 - 318
Target Start/End: Complemental strand, 8740213 - 8740138
Alignment:
| Q |
243 |
acctggtaagtcccaaggttcatagttgcatacatcaacttcagctataacattgttgacaatggaatcattacca |
318 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8740213 |
acctggtaagtcccaaggttcgtacttgcatacatcaacttcagctataacattgtttacaatggaatcattacca |
8740138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 8723799 - 8723692
Alignment:
| Q |
16 |
attgctacccctaaccttaatcttccggtccttaccagtagctttccaaaaaccagtatttgttgtcctcttaaaccttttactcttagcatacttataa |
115 |
Q |
| |
|
|||| ||||||||| | |||| || |||||| | ||||||||||||||||||||| |||| |||||||| ||||||||||||||||| |||||||| || |
|
|
| T |
8723799 |
attggtacccctaatcctaatgttacggtccattccagtagctttccaaaaaccattattagttgtccttttaaaccttttactctttgcatacttgtat |
8723700 |
T |
|
| Q |
116 |
tcaatagg |
123 |
Q |
| |
|
|||||||| |
|
|
| T |
8723699 |
tcaatagg |
8723692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 243 - 388
Target Start/End: Complemental strand, 8722214 - 8722069
Alignment:
| Q |
243 |
acctggtaagtcccaaggttcatagttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaagtaacnnnnnnnngagatagtgg |
342 |
Q |
| |
|
||||||||| |||||||||| | | ||| ||||||||||||||||||| |||||||| |||| ||||| ||||||||| |||||||| | |
|
|
| T |
8722214 |
acctggtaaatcccaaggtttaaacttgaatacatcaacttcagctatgacattgttaacaaactcttcattgccaagtaacttgtttctgagatagtag |
8722115 |
T |
|
| Q |
343 |
tttacaagctcttcatctgttggtcggaatctgaatccaacaggaa |
388 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
8722114 |
tttacaagctcttgatctgttggatggaatctgaatccaacaggaa |
8722069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 8740406 - 8740329
Alignment:
| Q |
50 |
ccagtagctttccaaaaaccagtatttgttgtcctcttaaaccttttactcttagcatacttataatcaataggacac |
127 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||| ||||||||||||||||| |||||||| || |||||||||||| |
|
|
| T |
8740406 |
ccagtagctttccaaaaaccattattcgttgtccttttaaaccttttactctttgcatacttgtattcaataggacac |
8740329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 388
Target Start/End: Complemental strand, 8738643 - 8738501
Alignment:
| Q |
246 |
tggtaagtcccaaggttcatagttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaagtaacnnnnnnnngagatagtggttt |
345 |
Q |
| |
|
|||||| |||||||| ||| | |||| ||||||||||| ||||| |||||||| ||| |||| |||||||||||||| ||| ||||| || |
|
|
| T |
8738643 |
tggtaattcccaaggctcaaacctgcaaacatcaacttctgctatgacattgttaacatgggaaacattaccaagtaacttgttcttgaggtagtgatta |
8738544 |
T |
|
| Q |
346 |
acaagctcttcatctgttggtcggaatctgaatccaacaggaa |
388 |
Q |
| |
|
|| || ||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
8738543 |
actagttcttcatttgttggtcggaatctgaatccgacaggaa |
8738501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 243 - 320
Target Start/End: Complemental strand, 8723559 - 8723482
Alignment:
| Q |
243 |
acctggtaagtcccaaggttcatagttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaag |
320 |
Q |
| |
|
||||||||| ||||| ||||| | |||| | |||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
8723559 |
acctggtaattcccatggttcgaacttgcgaatatcaacttcagctataacattgtttacaatggcgtcattaccaag |
8723482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University