View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1748_low_14 (Length: 323)
Name: NF1748_low_14
Description: NF1748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1748_low_14 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 6516809 - 6517131
Alignment:
| Q |
1 |
aacattctcttagacaaaaactacgttagcaagatcagtgatgttggtttggcgcgactcgttcctgcttcgatagccaacaaaaccactcaatatcgca |
100 |
Q |
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| T |
6516809 |
aacattctcttagacaaaaactacgttagcaagatcagtgatgttggtttggcgcgactcgttcctgcttcaatagccaacaaaaccactcaatatcgca |
6516908 |
T |
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| Q |
101 |
tgacaggtgcagctggaacattttgctacattgatcctgagtatcaacaaactggattattgggtgtgaaatcagatatattttcatttggtatgatttt |
200 |
Q |
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| T |
6516909 |
tgacaggcgcagctggaacattttgctacattgatcctgagtatcaacaaactggattattgggtgtgaaatcagatatattttcatttggtatgatttt |
6517008 |
T |
|
| Q |
201 |
gctacaaattatcactgcaaagcctccaatgggattgtctcatttagttgaagaagctatacagaaaagacacttcatgaacgtgcttgatccaaatgta |
300 |
Q |
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| T |
6517009 |
gctacaaattatcactgcaaagcctccaatgggtttatctcatatagttgaagaagctataaaaaaaggaaacttcatgaacgtgcttgatccaaatgta |
6517108 |
T |
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| Q |
301 |
ccacattgtcctgttgaagaggc |
323 |
Q |
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| T |
6517109 |
ccaaattgtcctgttgaagaggc |
6517131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 42673958 - 42674190
Alignment:
| Q |
1 |
aacattctcttagacaaaaactacgttagcaagatcagtgatgttggtttggcgcgactcgttcctgcttcgatagccaacaaaaccactcaatatcgca |
100 |
Q |
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| T |
42673958 |
aacattctcttagacagaaactacgtaagcaagatcagcgatgttggtttggcaaggcttgttccaccttctgtagaaaacaaaactaccgaatatcaca |
42674057 |
T |
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| Q |
101 |
tgacaggtgcagctggaacattttgctacattgatcctgagtatcaacaaactggattattgggtgtgaaatcagatatattttcatttggtatgatttt |
200 |
Q |
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|||| |||||| |||||||||| || |||||||| |||||||||||||| ||| ||||||| || |||||||| |||| |||||| ||| | || | |
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| T |
42674058 |
agacaaatgcagccggaacatttttttatattgatccggagtatcaacaaacaggactattgggcgtaaaatcagacatatattcattaggtgttatgct |
42674157 |
T |
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| Q |
201 |
gctacaaattatcactgcaaagcctccaatggg |
233 |
Q |
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| T |
42674158 |
tctacaaatcattactggaaagactccaatggg |
42674190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 210
Target Start/End: Complemental strand, 50439406 - 50439287
Alignment:
| Q |
91 |
caatatcgcatgacaggtgcagctggaacattttgctacattgatcctgagtatcaacaaactggattattgggtgtgaaatcagatatattttcatttg |
190 |
Q |
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|||||||||||||| | |||| |||||||| || || || |||||||||||||| ||||| ||| | || ||||||||||||||| ||| |||| ||| |
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| T |
50439406 |
caatatcgcatgacggcaacagcaggaacattctgttatatagatcctgagtatcagcaaacaggaatgttaggtgtgaaatcagatgtatattcacttg |
50439307 |
T |
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| Q |
191 |
gtatgattttgctacaaatt |
210 |
Q |
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| T |
50439306 |
gaatcattttccttcaaatt |
50439287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 48235755 - 48235715
Alignment:
| Q |
112 |
gctggaacattttgctacattgatcctgagtatcaacaaac |
152 |
Q |
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| T |
48235755 |
gctggaacattttgttatattgatcccgagtatcaacaaac |
48235715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 3686634 - 3686683
Alignment:
| Q |
1 |
aacattctcttagacaaaaactacgttagcaagatcagtgatgttggttt |
50 |
Q |
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| T |
3686634 |
aacattctcttagacaaaaattttgttagcaaaataagtgatgttggttt |
3686683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 3686724 - 3686780
Alignment:
| Q |
91 |
caatatcgcatgacaggtgcagctggaacattttgctacattgatcctgagtatcaa |
147 |
Q |
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| T |
3686724 |
caatatcacatgactgaagcagctggaacattatgttacattgatccagagtatcaa |
3686780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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