View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1748_low_15 (Length: 316)
Name: NF1748_low_15
Description: NF1748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1748_low_15 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 114 - 316
Target Start/End: Original strand, 32450628 - 32450831
Alignment:
| Q |
114 |
taacgacaatcaaagtcgtggttagttttgttttatggataattaacgagtcgtaacaccttgttatatttattacctgtacacatatat--ttaaaatg |
211 |
Q |
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| T |
32450628 |
taacgacaatcaaagtcgtggttagttttgttttatggataattaacgagtcgtaacaccttgttatatttattacctgaacacatatatatttaaaatg |
32450727 |
T |
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| Q |
212 |
tgttaaccatctactatattattttgatgtgaaatttataacataacttacatgaacaactgagtctcgagcagccagagcaagaatatcagcacaggac |
311 |
Q |
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| T |
32450728 |
tgtta-ccatctactatattattttgatgtgaaatttataacataacttacatgaacaactgagtctcgagcagccagagcaagaatatcagcacaggac |
32450826 |
T |
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| Q |
312 |
acaac |
316 |
Q |
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| T |
32450827 |
acaac |
32450831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 32431746 - 32431835
Alignment:
| Q |
18 |
aagtgtatatttgaatacaagttgtacttaatgaataccactaagaacaatttccttaaacacctaaaaattatgtttatttgaagactt |
107 |
Q |
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| T |
32431746 |
aagtgtatatttgaatacaagttgtgcttaatgaataccactaagaacaatttctttaaacacctgaaaattatgtttatttgaacactt |
32431835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 251 - 316
Target Start/End: Original strand, 32424719 - 32424784
Alignment:
| Q |
251 |
aacataacttacatgaacaactgagtctcgagcagccagagcaagaatatcagcacaggacacaac |
316 |
Q |
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| T |
32424719 |
aacataactcacatgaacaacagagtcccgggcagccagggtaagaatatcagcacaggacacaac |
32424784 |
T |
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