View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1748_low_16 (Length: 312)
Name: NF1748_low_16
Description: NF1748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1748_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 20 - 307
Target Start/End: Complemental strand, 27656476 - 27656189
Alignment:
| Q |
20 |
ccatggagagtgatcaatttgaggataagctccaccaccatcatccaccaatatcatcaactgtaaatatttttagatcgtcaattaatatcgattgtca |
119 |
Q |
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| T |
27656476 |
ccatggagagtgatcaattcgaggataagctccaccaccatcatccaccaatatcatcaactgtaaatattgttagatcgtcaattaatatcgattgtca |
27656377 |
T |
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| Q |
120 |
gataattaaaaatattttattatcattacgactatttctaaagttacacatgtgatttgttatgatttattgatagcgttaaaagtatcttagaaaagta |
219 |
Q |
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||||||||||||||||||||| |||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
27656376 |
gataattaaaaatattttattttcattatgactacttctaaagttacacatatgatttgttatgatttattgatagcgttaaaagcatcttagaaaagta |
27656277 |
T |
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| Q |
220 |
tgtactaaccacgattgtgaggcccctaaatgcatcaagagttgcaaccctacnnnnnnngtgcttaacctcttgctcctttgctact |
307 |
Q |
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| T |
27656276 |
tgtactaaccacgattgtgaggcccctaaatgcatcaagagttgcaaccctactttttttgtgcttaatctcttgctcctttggtact |
27656189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 41310035 - 41310096
Alignment:
| Q |
20 |
ccatggagagtgatcaatttgaggataagctccaccaccatcatccaccaatatcatcaact |
81 |
Q |
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|||||||||||||||||| | | ||||||||||||| |||| ||||||||||||||||||| |
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| T |
41310035 |
ccatggagagtgatcaatgcgtgaataagctccaccagcatcgtccaccaatatcatcaact |
41310096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 269
Target Start/End: Original strand, 41310313 - 41310359
Alignment:
| Q |
223 |
actaaccacgattgtgaggcccctaaatgcatcaagagttgcaaccc |
269 |
Q |
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| T |
41310313 |
actaaccacaatggtgaggcccctaaatgcatcaagtgttgcaaccc |
41310359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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