View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1748_low_19 (Length: 286)
Name: NF1748_low_19
Description: NF1748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1748_low_19 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 13 - 269
Target Start/End: Complemental strand, 14757443 - 14757187
Alignment:
| Q |
13 |
aatatgtgtgtgtacatgtatatatggtgtgagaagattattgctatacctgaataagcaccaatggagtgttaagcatatctgaagaaccaggaacatc |
112 |
Q |
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| T |
14757443 |
aatatgtgggtgtacatgtatatatggtgtgagaagattattgctatacctgaataagcagcaatggagtgttaagcatatctgaagaaccaggaacatc |
14757344 |
T |
|
| Q |
113 |
ataaagaagctcatctatgcaaggaaatggaggatgaagatcttcaccaaattctttcaaactaacatcagcatcagcttcaataaacaaaacaccttca |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
14757343 |
ataaagaagctcatctatgcaaggaaatggaggatgaagatcttcaccaaattctttcaaactaacatctgcatcagcttcaataaacaaaacaccttct |
14757244 |
T |
|
| Q |
213 |
ccattacaatcaaccataagtttcctaccaggaccttcccttaatctacctgcaaat |
269 |
Q |
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| T |
14757243 |
ccagtgcaatccaccataagtttcctacccggaccttcccttaatctacctgcaaat |
14757187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 57 - 269
Target Start/End: Original strand, 14789521 - 14789733
Alignment:
| Q |
57 |
tatacctgaataagcaccaatggagtgttaagcatatctgaagaaccaggaacatcataaagaagctcatctatgcaaggaaatggaggatgaagatctt |
156 |
Q |
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|||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14789521 |
tatacctgaataagcagcaatggagtgttaagcacaactgaagaaccaggaacatcataaagaagctcatctatgcaaggaaatggaggatgaagatctt |
14789620 |
T |
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| Q |
157 |
caccaaattctttcaaactaacatcagcatcagcttcaataaacaaaacaccttcaccattacaatcaaccataagtttcctaccaggaccttcccttaa |
256 |
Q |
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| T |
14789621 |
caccaaattgttcaagagtaacatcagcatcagcttcaataaacaaaataccttcatcattacaatccaccataagtttcctacttggaccttcccttaa |
14789720 |
T |
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| Q |
257 |
tctacctgcaaat |
269 |
Q |
| |
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||||||||||||| |
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| T |
14789721 |
tctacctgcaaat |
14789733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 56 - 269
Target Start/End: Original strand, 14879963 - 14880176
Alignment:
| Q |
56 |
ctatacctgaataagcaccaatggagtgttaagcatatctgaagaaccaggaacatcataaagaagctcatctatgcaaggaaatggaggatgaagatct |
155 |
Q |
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||||||||||||||||| |||||||||||||| || |||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||| | |
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| T |
14879963 |
ctatacctgaataagcatcaatggagtgttaatcacatctgaagaaccaggaacataataaagaagctcatccaagcaaggaaatggaggatgaagagca |
14880062 |
T |
|
| Q |
156 |
tcaccaaattctttcaaactaacatcagcatcagcttcaataaacaaaacaccttcaccattacaatcaaccataagtttcctaccaggaccttccctta |
255 |
Q |
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|||||||| ||||| | | ||||||| ||||||||||||||||||||||||||||| ||| | ||||| ||||||||||||||||||||||||||||||| |
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| T |
14880063 |
tcaccaaactctttaagagtaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggaccttccctta |
14880162 |
T |
|
| Q |
256 |
atctacctgcaaat |
269 |
Q |
| |
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|||||||||||||| |
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| T |
14880163 |
atctacctgcaaat |
14880176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 58 - 269
Target Start/End: Original strand, 14769473 - 14769684
Alignment:
| Q |
58 |
atacctgaataagcaccaatggagtgttaagcatatctgaagaaccaggaacatcataaagaagctcatctatgcaaggaaatggaggatgaagatcttc |
157 |
Q |
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|||||||||| | || ||||||| |||||||| ||||||||||||||||||||| ||||||||||||| | |||||||| ||||| |||||| | || |
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| T |
14769473 |
atacctgaatcaccaacaatggacagttaagcacttctgaagaaccaggaacatcaaaaagaagctcatccaaacaaggaaaaggaggttgaagagcatc |
14769572 |
T |
|
| Q |
158 |
accaaattctttcaaactaacatcagcatcagcttcaataaacaaaacaccttcaccattacaatcaaccataagtttcctaccaggaccttcccttaat |
257 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| | ||||| ||||||||||||||||||||||||||||||||| |
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| T |
14769573 |
accaaattctttcaaactaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggaccttcccttaat |
14769672 |
T |
|
| Q |
258 |
ctacctgcaaat |
269 |
Q |
| |
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|||||||||||| |
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| T |
14769673 |
ctacctgcaaat |
14769684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 56 - 269
Target Start/End: Original strand, 14874677 - 14874890
Alignment:
| Q |
56 |
ctatacctgaataagcaccaatggagtgttaagcatatctgaagaaccaggaacatcataaagaagctcatctatgcaaggaaatggaggatgaagatct |
155 |
Q |
| |
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||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||| ||||| | ||| ||||||||||||||||| |
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| T |
14874677 |
ctatacctgaataagcagcaatggagtgttaagcacatctgaagaaccaagaacatcataaagaagttcatccaaacaacgaaatggaggatgaagagta |
14874776 |
T |
|
| Q |
156 |
tcaccaaattctttcaaactaacatcagcatcagcttcaataaacaaaacaccttcaccattacaatcaaccataagtttcctaccaggaccttccctta |
255 |
Q |
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||||| || ||||| | ||||||| ||||||||||||||||||||||||||||| ||| | ||||| ||||||||||||||||||||||||||||||| |
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| T |
14874777 |
tcacccaaatctttaatggtaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggaccttccctta |
14874876 |
T |
|
| Q |
256 |
atctacctgcaaat |
269 |
Q |
| |
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| |||||||||||| |
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| T |
14874877 |
acctacctgcaaat |
14874890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 235
Target Start/End: Complemental strand, 36307216 - 36307158
Alignment:
| Q |
177 |
acatcagcatcagcttcaataaacaaaacaccttcaccattacaatcaaccataagttt |
235 |
Q |
| |
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||||||||||| || ||||| |||| ||||||||| ||||||||||| ||||| ||||| |
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|
| T |
36307216 |
acatcagcatctgcctcaatgaacataacaccttctccattacaatccaccatgagttt |
36307158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 59 - 265
Target Start/End: Original strand, 91636 - 91842
Alignment:
| Q |
59 |
tacctgaataagcaccaatggagtgttaagcatatctgaagaaccaggaacatcataaagaagctcatctatgcaaggaaatggaggatgaagatcttca |
158 |
Q |
| |
|
|||||||||||||| ||||||||||||||| | |||||||||||||||||||||||| | ||||||| | | ||| ||||||||||||||||| | ||| |
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| T |
91636 |
tacctgaataagcagcaatggagtgttaagaacatctgaagaaccaggaacatcatagataagctcacccaagcatggaaatggaggatgaagtgcatca |
91735 |
T |
|
| Q |
159 |
ccaaattctttcaaactaacatcagcatcagcttcaataaacaaaacaccttcaccattacaatcaaccataagtttcctaccaggaccttcccttaatc |
258 |
Q |
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||||||| ||| | | ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| || ||||||||||| || | |
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| T |
91736 |
ccaaattgtttaagagtaacatcagcatcagcttcaataaacaaaacaccttctccagtacaatcaaccataagtttcctgccgggaccttccctcaacc |
91835 |
T |
|
| Q |
259 |
tacctgc |
265 |
Q |
| |
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||||||| |
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| T |
91836 |
tacctgc |
91842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 115 - 269
Target Start/End: Complemental strand, 14857695 - 14857541
Alignment:
| Q |
115 |
aaagaagctcatctatgcaaggaaatggaggatgaagatcttcaccaaattctttcaaactaacatcagcatcagcttcaataaacaaaacaccttcacc |
214 |
Q |
| |
|
||||||||||||| | |||||||| ||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
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| T |
14857695 |
aaagaagctcatccaaacaaggaaaaggaggttgaagagcatcaccaaattctttcaaactaacatcagcatcagcttcaataaacaaaataccttcatc |
14857596 |
T |
|
| Q |
215 |
attacaatcaaccataagtttcctaccaggaccttcccttaatctacctgcaaat |
269 |
Q |
| |
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||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
14857595 |
attacaatctaccataagcttcctaccaggaccttcccttaatctacctgcaaat |
14857541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 47240881 - 47240829
Alignment:
| Q |
177 |
acatcagcatcagcttcaataaacaaaacaccttcaccattacaatcaaccat |
229 |
Q |
| |
|
|||||||| ||||||||||| |||| |||||||||||| ||||||| ||||| |
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|
| T |
47240881 |
acatcagcttcagcttcaatgaacatgacaccttcaccagtacaatccaccat |
47240829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 47282232 - 47282148
Alignment:
| Q |
131 |
gcaaggaaatggaggatgaagatcttcaccaaattctttcaaactaacatcagcatcagcttcaataaacaaaacaccttcacca |
215 |
Q |
| |
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|||||| ||||| ||||||||| | ||||||||||| || | | |||||||| ||||||||||| |||| |||||||||||| |
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| T |
47282232 |
gcaagggaatgggggatgaagagcatcaccaaattcattaagtgttacatcagcttcagcttcaatgaacatgacaccttcacca |
47282148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 47296312 - 47296364
Alignment:
| Q |
177 |
acatcagcatcagcttcaataaacaaaacaccttcaccattacaatcaaccat |
229 |
Q |
| |
|
|||||||| ||||||||||| |||| |||||||||||| ||||||| ||||| |
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|
| T |
47296312 |
acatcagcttcagcttcaatgaacatgacaccttcaccagtacaatccaccat |
47296364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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