View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1748_low_2 (Length: 488)
Name: NF1748_low_2
Description: NF1748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1748_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 61 - 473
Target Start/End: Original strand, 11118619 - 11119020
Alignment:
| Q |
61 |
tatcaaacgatgatatttagataagatgatatgagtctccttaatttttaatttgaatttaatcatgaaccatagtgatattaaaatttaaactattgag |
160 |
Q |
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| T |
11118619 |
tatcaaaccatgatatttagataagatgatatgagcctccttaattttaaatttgaatttaatcatgtaccatagtgatattaaaattta---------- |
11118708 |
T |
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| Q |
161 |
gagagttgtcgcgactttagatttcacatgactcggat-------nnnnnnnnnnnggacaaactgcatccattaacaatcaaataagnnnnnnnaaaag |
253 |
Q |
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| T |
11118709 |
--------tcgcgactttagatttcacatgactcggataaaaaaaaaaaaaaaaaaggacaaactgcatccattaacactcaaataagtatttttaaaag |
11118800 |
T |
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| Q |
254 |
taattaaattttgatgaggaattgtttgaactaggattcaaactcgaattcttccgnnnnnnntgtgtatcttactagatcttattaatccctagagcta |
353 |
Q |
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| T |
11118801 |
taattaaatcttgatgaggaattgtttgaactaggattcaaactcgaattcttccaaaaaaaatgtgtatcttactagatcttattaatccctagagcta |
11118900 |
T |
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| Q |
354 |
tatagcacatgatgtaggagtatatgatttacttgaatgcttcaatttcaggtgcccatacattaggaagagcacgttgtcttttcatacttgatcgatt |
453 |
Q |
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| T |
11118901 |
tatagcacatgatgtaggagtatatgatttacttgaatggttcaatttcaggtgcccatacattaggaagagcacgttgtcttttcatacttgatcgatt |
11119000 |
T |
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| Q |
454 |
atacgacttcgaaaatactg |
473 |
Q |
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| T |
11119001 |
atacgacttcgacaatactg |
11119020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 17 - 150
Target Start/End: Original strand, 11118557 - 11118708
Alignment:
| Q |
17 |
agcactctcaggtatggaaatacatgcaccatttcct--ataataa----------------tatcaaacgatgatatttagataagatgatatgagtct |
98 |
Q |
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| T |
11118557 |
agcactctcaggtatgcaaatacatgcaccatttcctaaataataataataatataattttctatcaaaccatgatatttagataagatgatatgagcct |
11118656 |
T |
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| Q |
99 |
ccttaatttttaatttgaatttaatcatgaaccatagtgatattaaaattta |
150 |
Q |
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| T |
11118657 |
ccttaattttaaatttgaatttaatcatgtaccatagtgatattaaaattta |
11118708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 393 - 473
Target Start/End: Original strand, 11111169 - 11111249
Alignment:
| Q |
393 |
cttcaatttcaggtgcccatacattaggaagagcacgttgtcttttcatacttgatcgattatacgacttcgaaaatactg |
473 |
Q |
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| T |
11111169 |
cttcaacttcaggtgctcatacatttgggagagcacgttgccttttcatccttgatcgattatacaacttcaacaatactg |
11111249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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