View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1748_low_22 (Length: 254)
Name: NF1748_low_22
Description: NF1748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1748_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 111 - 242
Target Start/End: Complemental strand, 36723895 - 36723764
Alignment:
| Q |
111 |
tgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaataaagtcaggctaatgaggttgctcatgagttagctcagatagtcc |
210 |
Q |
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| T |
36723895 |
tgcttgtagacagttatttcatagtagatttcaaaactcttaagttgagtttaatagagtcagactaatgggattgctcacgagttagctcagatagtcc |
36723796 |
T |
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| Q |
211 |
cacataatactaactcccacacctatgatgat |
242 |
Q |
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| T |
36723795 |
cacataatactagctctcacacctatgatgat |
36723764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 36724357 - 36724252
Alignment:
| Q |
19 |
gataatacagatttttctctagactttgtgaaagatgtggatgctcttagaacaagcatataagataatggtgaatttagatgcattatagatgcttgta |
118 |
Q |
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| T |
36724357 |
gataatacagatttttctctagactctgtgaaggatgtggatgctcttagaacaagcatataagatagtagtgaatttagatgcattatagatgcttgta |
36724258 |
T |
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| Q |
119 |
gacagt |
124 |
Q |
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|||||| |
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| T |
36724257 |
gacagt |
36724252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 244
Target Start/End: Original strand, 717447 - 717603
Alignment:
| Q |
89 |
gtgaatttagatgcattatagatgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaata-aagtcaggctaatgaggttgc |
187 |
Q |
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| T |
717447 |
gtgaatttggatgtattatagttgaatgtagacaattattccaaagtagatttcaaaactctcatgttgagtttaataggagacaagctaatgggatcac |
717546 |
T |
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| Q |
188 |
tcatgagttagctcagatagtcccacataatactaactcccacacctatgatgatgt |
244 |
Q |
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| T |
717547 |
ttacgagttagctcatatagccccacataatgctagatctctcacttatgatgatgt |
717603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 166
Target Start/End: Original strand, 712175 - 712314
Alignment:
| Q |
27 |
agatttttctctagactttgtgaaagatgtggatgctcttagaacaagcatataagataatggtgaatttagatgcattatagatgcttgtagacagtta |
126 |
Q |
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| T |
712175 |
agattttgctctagactctaagaaggttgtggatgcttttagaacatgtgtagaagatagttgtgaatttggatgtattatacttgcatgtagatagttg |
712274 |
T |
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| Q |
127 |
tttcatagtagatttcaaaactctcaaattgagtttaata |
166 |
Q |
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| T |
712275 |
tttcaaaatagattttaaaactctcatgttgagtttaata |
712314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 166
Target Start/End: Original strand, 14541111 - 14541248
Alignment:
| Q |
29 |
atttttctctagactttgtgaaagatgtggatgctcttagaacaagcatataagataatggtgaatttagatgcattatagatgcttgtagacagttatt |
128 |
Q |
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| T |
14541111 |
atttttctctagactcttagaagattgtggatgcttttagaacatatgtagaagataatagtaaatttagatgtattatagatgtttgtagacaagtgtt |
14541210 |
T |
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| Q |
129 |
tcatagtagatttcaaaactctcaaattgagtttaata |
166 |
Q |
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| T |
14541211 |
tcaaagtaattttaaaaactctcgtattgagtttaata |
14541248 |
T |
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