View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1748_low_26 (Length: 237)
Name: NF1748_low_26
Description: NF1748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1748_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 2 - 220
Target Start/End: Complemental strand, 48006170 - 48005952
Alignment:
| Q |
2 |
ctatttaccggagctccgttttaacttaatccgcaatctattcaaattactcccataatattagctaaatactgttatataatctctataaaaattataa |
101 |
Q |
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| T |
48006170 |
ctatttaccggagctcctttttaacttaatccgcaatctattcaaattactcccataatgttagctaaatacagttatataatctctataaaagttataa |
48006071 |
T |
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| Q |
102 |
accgagaactctttctctggtgacttgtgcacgtcttgctctaaaacaaaaaacctatagcttaaaaccacaacaatcaaaccctacttcaatatcgtaa |
201 |
Q |
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| T |
48006070 |
accgagaactctttctctagtgacttgtacacgtcttgctctaaaacaaaaaacctatagcttaaaactacaacaatcaaaccctacttcaatatcgtaa |
48005971 |
T |
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| Q |
202 |
aaccaaaccataacaatca |
220 |
Q |
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||||||| ||||||||||| |
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| T |
48005970 |
aaccaaaacataacaatca |
48005952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 48005959 - 48005912
Alignment:
| Q |
173 |
aacaatcaaaccctacttcaatatcgtaaaaccaaaccataacaatca |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48005959 |
aacaatcaaaccctacttcaatatcgtaaaaccaaaccataacaatca |
48005912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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