View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1748_low_3 (Length: 475)
Name: NF1748_low_3
Description: NF1748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1748_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 4e-73; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 307 - 458
Target Start/End: Complemental strand, 34354198 - 34354047
Alignment:
| Q |
307 |
tcctcaaatggaagttttttcgttcatatgtacttaccctgtcgttgcttgctctcaacataacacacccgttgaacaccttgctcagaaagacttgtaa |
406 |
Q |
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| T |
34354198 |
tcctcaaatagaagttttttcattcatatgtacttaccccgtcgttgcttgctctcaacataacacacccgttgaacaccttgctcagaaagacttgtaa |
34354099 |
T |
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| Q |
407 |
tacaagaatcaatcaaaccatcgactctatgccattgttggatcataagaag |
458 |
Q |
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| T |
34354098 |
tacaagaatcaatcaaaccatcgactctatgccattgttggatcataagaag |
34354047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 146 - 311
Target Start/End: Complemental strand, 34354417 - 34354238
Alignment:
| Q |
146 |
gttgagttattagaggagtttgaagataatttatattgagtttaaaagcaaccattattagagaaataatgcatcttcaccatttcacatatacaaacat |
245 |
Q |
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| T |
34354417 |
gttgagttattagaggagtttgaagataatttatattgagtt-aaaagcaaccattattagagaaataatgcatcttcaccatttcacatatacaaacat |
34354319 |
T |
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| Q |
246 |
ccacttttt---------------ctacttttgacatttccatcaaatgtgagactactcttgaaacaaacaatcttcctc |
311 |
Q |
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| T |
34354318 |
ccactttttctacatccactttttctacttttgacatttccatcaaatgtgagactactcttgaaacaaacaatcttcctc |
34354238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 34354551 - 34354482
Alignment:
| Q |
10 |
aagaatatttatatacatcatgtgatnnnnnnnacccaccaacctattacatctattacttcactcttatt |
80 |
Q |
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| T |
34354551 |
aagaatatttatatacatcatgtgatcccccc-acccaccaacctattacatctattacttcactcttatt |
34354482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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