View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1748_low_31 (Length: 217)
Name: NF1748_low_31
Description: NF1748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1748_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 34320240 - 34320039
Alignment:
| Q |
1 |
cattcaatggtaattttatcttttaatctgccagcaaaagggtagtatttagataaaagttgagataaagattttcgaagtagtgatacattggaatttt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34320240 |
cattcaatggtaattttatcttttaatctgccagcaaaagggtagtatttagataaaagttgagataaagattttcgaagtagtgatactttggaatttt |
34320141 |
T |
|
| Q |
101 |
ggtcactaccctcatttggattgtaaaagaaaatgactggaacatataaacgnnnnnnnntgttatcaatgaaagaaagtggaaaaattctgaggtgagt |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
34320140 |
ggtcactacactcatttggattgtaaaagaaaatgactggaacatataaacgaaaaaaaatgttatcaatgaaagaaagtggataaattctgaggtgagt |
34320041 |
T |
|
| Q |
201 |
ag |
202 |
Q |
| |
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|| |
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| T |
34320040 |
ag |
34320039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 34329140 - 34329075
Alignment:
| Q |
9 |
ggtaattttatcttttaatctgccagcaaaagggtagtatttagataaaagttgagataaagattt |
74 |
Q |
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| T |
34329140 |
ggtaattttatctttcaaccttccagcaaaaggataatatttggataaaagttgagataaagattt |
34329075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 5e-21; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 36627810 - 36627913
Alignment:
| Q |
1 |
cattcaatggtaattttatcttttaatctgccagcaaaagggtagtatttagataaaagttgagataaagattttcgaagtagtgatacattggaatttt |
100 |
Q |
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| T |
36627810 |
cattcaatggtaattctatctttaatcctaccagcaaaaggatagtatttggatagaagttgagataaggattttcgaagttgtgatatttttgaatttt |
36627909 |
T |
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| Q |
101 |
ggtc |
104 |
Q |
| |
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|||| |
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|
| T |
36627910 |
ggtc |
36627913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 36633377 - 36633456
Alignment:
| Q |
1 |
cattcaatggtaattttatcttttaatctgccagcaaaagggtagtatttagataaaagttgagataaagattttcgaag |
80 |
Q |
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||||||||||||||||||||||| | || ||||||||| | ||| |||||||||||||||||||||||||||||||||| |
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| T |
36633377 |
cattcaatggtaattttatctttaatcctaccagcaaaatgatagaatttagataaaagttgagataaagattttcgaag |
36633456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 36622573 - 36622659
Alignment:
| Q |
1 |
cattcaatggtaattttatcttttaatctgccagcaaaagggtagtatttagataaaagttgagataaagattttcgaagtagtgat |
87 |
Q |
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||||||||||||||||||||||| | || ||||||||| | ||||||||||||| |||||||||||| |||||||| ||| ||||| |
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| T |
36622573 |
cattcaatggtaattttatctttaatcctaccagcaaaatgatagtatttagatagaagttgagataaggattttcggagttgtgat |
36622659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 45306934 - 45307066
Alignment:
| Q |
1 |
cattcaatggtaattttatcttttaatctgccagcaaaagggtagtatttagataaaagttgagataaagattttcgaagtagtgatacattggaatttt |
100 |
Q |
| |
|
||||||||||||||||||||||| || || ||||| ||| ||||||||| |||| || ||||||||| ||||||| ||| |||||| || ||||||| |
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| T |
45306934 |
cattcaatggtaattttatctttcaacctaccagcgaaaatgtagtatttggatagaatttgagataaggattttctgagttgtgatatttttgaatttt |
45307033 |
T |
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| Q |
101 |
ggtcactaccctcatttggattgtaaaagaaaa |
133 |
Q |
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||||||| | ||||||| || ||||||||||| |
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| T |
45307034 |
ggtcactgtcttcatttgaatggtaaaagaaaa |
45307066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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