View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1748_low_4 (Length: 466)

Name: NF1748_low_4
Description: NF1748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1748_low_4
NF1748_low_4
[»] chr3 (5 HSPs)
chr3 (1-466)||(49201537-49202002)
chr3 (90-466)||(49206587-49206957)
chr3 (274-466)||(49186830-49187022)
chr3 (288-404)||(49211365-49211481)
chr3 (274-404)||(49190534-49190663)
[»] chr1 (6 HSPs)
chr1 (255-466)||(51823510-51823719)
chr1 (274-419)||(31526646-31526791)
chr1 (237-419)||(32593607-32593784)
chr1 (286-407)||(37030012-37030133)
chr1 (35-73)||(25275142-25275181)
chr1 (150-209)||(37029859-37029918)
[»] chr4 (1 HSPs)
chr4 (237-366)||(52267388-52267516)
[»] chr8 (3 HSPs)
chr8 (332-466)||(26755869-26756000)
chr8 (35-73)||(35049084-35049123)
chr8 (139-244)||(26755757-26755863)
[»] scaffold0102 (1 HSPs)
scaffold0102 (35-73)||(14371-14410)
[»] chr5 (5 HSPs)
chr5 (35-73)||(5708173-5708212)
chr5 (35-73)||(8933893-8933932)
chr5 (35-73)||(9821439-9821478)
chr5 (35-73)||(14196578-14196617)
chr5 (41-70)||(19967118-19967147)
[»] chr2 (2 HSPs)
chr2 (35-73)||(5375600-5375639)
chr2 (44-73)||(43323771-43323800)
[»] chr7 (1 HSPs)
chr7 (44-73)||(18264571-18264600)


Alignment Details
Target: chr3 (Bit Score: 425; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Original strand, 49201537 - 49202002
Alignment:
Q  1 aatgtgatgtaatcatatggatctcatggatcatattaacaaattttttgtttgatggatggattggatggatcatatcattgatgttagtccctgtcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49201537 aatgtgatgtaatcatatggatctcatggatcatattaacaaattttttgtttgatggatggattggatggatcatatcattgatgttagtccctgtcaa 49201636  T
Q  101 gagttttgttttaaacaccaaaagtgcattcnnnnnnntaccatgcatgtaaaaatgtaaattaaattgtcatataacataatagtttgaacctaaaact 200  Q
    |||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49201637 gagttttgttttaaacaccaaaagtgcattcaaaaaaataccatgcatgtaaaaatgtaaattaaattgtcatataacataatagtttgaacctaaaact 49201736  T
Q  201 aataaaagactggtgaatcaaacacataaatcacgcaataaaagttactactgatataaacctaatacttgcattgcatcatcctaattaagggcttttc 300  Q
    ||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49201737 aataaaagactggtgaatcaaacacatcaatcacacaataaaaggtactactgatataaacctaatacttgcattgcatcatcctaattaagggcttttc 49201836  T
Q  301 tcagataaggctcccatccaagcaggaggcaacatgcccgtttgctcatggacagtcttaaacaaaggtggcaacatcttgtagacaccagcaacttctt 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  49201837 tcagataaggctcccatccaagcaggaggcaacatgcccgtttgctcatggacagtcttaaacagaggtggcaacatcttgtagacaccagcaacttctt 49201936  T
Q  401 tcatacccatggaaccttcagttttttcaccaccactatcactaccattagtccaaatactaatct 466  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49201937 tcatacccatggcaccttcagttttttcaccaccactatcactaccattagtccaaatactaatct 49202002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 90 - 466
Target Start/End: Original strand, 49206587 - 49206957
Alignment:
Q  90 gtccctgtcaagagttttgttttaaacaccaaaagtgcattcnnnnnnntaccatgcatgtaaaaatgtaaattaaattgtcatataacataatagt--- 186  Q
    ||||||||||  ||||||||||||||| |||||| | |||||       ||||| ||||||||||||||||| |||||  |||||| ||||| ||||       
T  49206587 gtccctgtcagaagttttgttttaaacgccaaaattccattcaaaaaa-taccaagcatgtaaaaatgtaaactaaatcatcatatgacatagtagtagt 49206685  T
Q  187 ttgaacctaaaactaataaaagactggtgaatcaaacacataaatcacgcaataaaagttactactgatataaacctaatacttgcattgcatcatccta 286  Q
    |||||||||||||||||||||||||||||||| |||||||||  |||| ||||||||| |||| ||  | ||||||||||||||||||       ||| |    
T  49206686 ttgaacctaaaactaataaaagactggtgaataaaacacata--tcacacaataaaaggtactgctattgtaaacctaatacttgcatc------tccaa 49206777  T
Q  287 attaagggcttttctcagataaggctcccatccaagcaggaggcaacatgcccgtttgctcatggacagtcttaaacaaaggtggcaacatcttgtagac 386  Q
    |||||| | |||| |||| ||| | |||||||||||| ||||| |||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||    
T  49206778 attaagagtttttgtcaggtaaagatcccatccaagccggaggaaacatgcctgtttgctcatggacagtcttaaacagaggcggcaacatcttgtagac 49206877  T
Q  387 accagcaacttctttcatacccatggaaccttcagttttttcaccaccactatcactaccattagtccaaatactaatct 466  Q
    |||||||||||||||||||||||||| |||||||||| || | |||  | |||||| |||||||||||||||||||||||    
T  49206878 accagcaacttctttcatacccatggcaccttcagttattcccccattattatcaccaccattagtccaaatactaatct 49206957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 274 - 466
Target Start/End: Original strand, 49186830 - 49187022
Alignment:
Q  274 ttgcatcatcctaattaagggcttttctcagataaggctcccatccaagcaggaggcaacatgcccgtttgctcatggacagtcttaaacaaaggtggca 373  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  49186830 ttgcatcatcctaatcaagagcttttctcagataaggctcccatccaagcaggaggcaacatgcccgtttgctcatggacagtcttaaacagaggtggca 49186929  T
Q  374 acatcttgtagacaccagcaacttctttcatacccatggaaccttcagttttttcaccaccactatcactaccattagtccaaatactaatct 466  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||||| || | |||| | |||||| |||||||||||||||||||||||    
T  49186930 acatcttgtagacaccagcaacttctttcatacccatggcaccatcagttattcccccactattatcaccaccattagtccaaatactaatct 49187022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 288 - 404
Target Start/End: Original strand, 49211365 - 49211481
Alignment:
Q  288 ttaagggcttttctcagataaggctcccatccaagcaggaggcaacatgcccgtttgctcatggacagtcttaaacaaaggtggcaacatcttgtagaca 387  Q
    ||||| |||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||    
T  49211365 ttaagagcttttgtcagataaggatcccatccaagcaggaggcaacatgcctgtttgctcatggacagtcttaaacagaggtggcaacatcttgtacaca 49211464  T
Q  388 ccagcaacttctttcat 404  Q
    |||||||||||||||||    
T  49211465 ccagcaacttctttcat 49211481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 274 - 404
Target Start/End: Original strand, 49190534 - 49190663
Alignment:
Q  274 ttgcatcatcctaattaagggcttttctcagataaggctcccatccaagcaggaggcaacatgcccgtttgctcatggacagtcttaaacaaaggtggca 373  Q
    |||||||||||||||| | |  |||| ||||  ||| |||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||||||||    
T  49190534 ttgcatcatcctaattcaagt-ttttgtcaggcaagactcccatccaagcaggtggtaacattcccgtttgctcatgaacagtcttaaacaaaggtggca 49190632  T
Q  374 acatcttgtagacaccagcaacttctttcat 404  Q
    |||||||||||||||||||||||||||||||    
T  49190633 acatcttgtagacaccagcaacttctttcat 49190663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 1e-54; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 255 - 466
Target Start/End: Original strand, 51823510 - 51823719
Alignment:
Q  255 tataaacctaatacttgcattgcatcatcctaattaagggcttttctcagataaggctcccatccaagcaggaggcaacatgcccgtttgctcatggaca 354  Q
    ||||||||||||||||   ||||||| ||||||||||| |||||| || ||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  51823510 tataaacctaatacttc--ttgcatcctcctaattaagagcttttgtcggataaggttcccatccaagcaggaggcaacatgcctgtttgctcatggaca 51823607  T
Q  355 gtcttaaacaaaggtggcaacatcttgtagacaccagcaacttctttcatacccatggaaccttcagttttttcaccaccactatcactaccattagtcc 454  Q
    ||||| |||| |||||||| ||||||||||||||||||||| |||||||||||||| |||||||| | | || | || ||| | || |  ||||||||||    
T  51823608 gtcttgaacagaggtggcagcatcttgtagacaccagcaacctctttcatacccatagaaccttcggctattccgcctccattgtcccctccattagtcc 51823707  T
Q  455 aaatactaatct 466  Q
    ||||||||||||    
T  51823708 aaatactaatct 51823719  T

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Target: chr1; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 274 - 419
Target Start/End: Original strand, 31526646 - 31526791
Alignment:
Q  274 ttgcatcatcctaattaagggcttttctcagataaggctcccatccaagcaggaggcaacatgcccgtttgctcatggacagtcttaaacaaaggtggca 373  Q
    ||||||| ||||||||||| |||||| || ||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  31526646 ttgcatcctcctaattaagagcttttgtctgataaggttcctatccaagcaggaggcaacatgcctgtttgctcatggacagtcttaaacaaaggtggca 31526745  T
Q  374 acatcttgtagacaccagcaacttctttcatacccatggaaccttc 419  Q
    |||||||||| ||||||||||| |||||||||||||| ||||||||    
T  31526746 acatcttgtaaacaccagcaacctctttcatacccatagaaccttc 31526791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 237 - 419
Target Start/End: Complemental strand, 32593784 - 32593607
Alignment:
Q  237 aataaaagttactactgatataaacctaatacttgcattgcatcatcctaattaagggcttttctcagataaggctcccatccaagcaggaggcaacatg 336  Q
    |||||||| || ||||  ||||||||||||||||||||     | ||||||||||| |||||| || ||||||| |||||||||||||||||||||||||    
T  32593784 aataaaaggtattactactataaacctaatacttgcat-----cctcctaattaagagcttttgtcggataaggttcccatccaagcaggaggcaacatg 32593690  T
Q  337 cccgtttgctcatggacagtcttaaacaaaggtggcaacatcttgtagacaccagcaacttctttcatacccatggaaccttc 419  Q
    || ||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||| |||||||| ||||| ||||||||    
T  32593689 cctgtttgctcatggacagtcttaaacagaggtggcagcatcttgtaaacaccagcaacctctttcatgcccatagaaccttc 32593607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 286 - 407
Target Start/End: Original strand, 37030012 - 37030133
Alignment:
Q  286 aattaagggcttttctcagataaggctcccatccaagcaggaggcaacatgcccgtttgctcatggacagtcttaaacaaaggtggcaacatcttgtaga 385  Q
    ||||||| | |||| ||||  ||| |||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  37030012 aattaagagtttttgtcaggcaagactcccatccaagcaggtggtaacattcccgtttgctcatggacagtcttaaacaaaggtggcaacatcttgtaga 37030111  T
Q  386 caccagcaacttctttcatacc 407  Q
    ||||||||||||||||||||||    
T  37030112 caccagcaacttctttcatacc 37030133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 25275181 - 25275142
Alignment:
Q  35 attaacaaatttttt-gtttgatggatggattggatggat 73  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  25275181 attaacaaatttttttgtttgatggatggattggatggat 25275142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 209
Target Start/End: Original strand, 37029859 - 37029918
Alignment:
Q  150 taaaaatgtaaattaaattgtcatataacataatagtttgaacctaaaactaataaaaga 209  Q
    ||||||||||||||||||  |||||| | |||| ||||| |||| |||||||||||||||    
T  37029859 taaaaatgtaaattaaatcatcatatgatataagagtttaaacccaaaactaataaaaga 37029918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 237 - 366
Target Start/End: Complemental strand, 52267516 - 52267388
Alignment:
Q  237 aataaaagttactactgatataaacctaatacttgcattgcatcatcctaattaagggcttttctcagataaggctcccatccaagcaggaggcaacatg 336  Q
    |||||||| |||||||  |||||||||||||||||| ||||||| ||||||||||| |||||| || ||||||| |||||||||||||||||||||||||    
T  52267516 aataaaaggtactactactataaacctaatacttgc-ttgcatcctcctaattaagagcttttgtcggataaggttcccatccaagcaggaggcaacatg 52267418  T
Q  337 cccgtttgctcatggacagtcttaaacaaa 366  Q
    || |||||||||||||||||||||||||||    
T  52267417 cctgtttgctcatggacagtcttaaacaaa 52267388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 332 - 466
Target Start/End: Original strand, 26755869 - 26756000
Alignment:
Q  332 acatgcccgtttgctcatggacagtcttaaacaaaggtggcaacatcttgtagacaccagcaacttctttcatacccatggaaccttcagttttttcacc 431  Q
    ||||||| |||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||  ||| ||||||||||| ||    
T  26755869 acatgcctgtttgctcatggactgtcttaaacagaggtggcaacatcttgtacacaccagcaacttctttcatacctatgccaccgtcagttttttcgcc 26755968  T
Q  432 accactatcactaccattagtccaaatactaatct 466  Q
    |||  ||||   |||||||||||||||||||||||    
T  26755969 accgttatc---accattagtccaaatactaatct 26756000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 73
Target Start/End: Original strand, 35049084 - 35049123
Alignment:
Q  35 attaacaaatttt-ttgtttgatggatggattggatggat 73  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  35049084 attaacaaatttttttgtttgatggatggattggatggat 35049123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 244
Target Start/End: Original strand, 26755757 - 26755863
Alignment:
Q  139 taccatgcatgtaaaaatgtaaattaaatt-gtcatataacataatagtttgaacctaaaactaataaaagactggtgaatcaaacacataaatcacgca 237  Q
    ||||| |||| |||||||||||||||||||   |||||||||||| | ||  ||||| ||||||  |||||||| ||||||||  |||||  ||||| ||    
T  26755757 taccaagcatataaaaatgtaaattaaattaagcatataacataagatttaaaacctgaaactataaaaagactagtgaatcagtcacatgtatcacaca 26755856  T
Q  238 ataaaag 244  Q
    |||||||    
T  26755857 ataaaag 26755863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 73
Target Start/End: Original strand, 14371 - 14410
Alignment:
Q  35 attaacaaatttt-ttgtttgatggatggattggatggat 73  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  14371 attaacaaatttttttgtttgatggatggattggatggat 14410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 5708212 - 5708173
Alignment:
Q  35 attaacaaatttttt-gtttgatggatggattggatggat 73  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  5708212 attaacaaatttttttgtttgatggatggattggatggat 5708173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 73
Target Start/End: Original strand, 8933893 - 8933932
Alignment:
Q  35 attaacaaatttt-ttgtttgatggatggattggatggat 73  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  8933893 attaacaaatttttttgtttgatggatggattggatggat 8933932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 9821478 - 9821439
Alignment:
Q  35 attaacaaatt-ttttgtttgatggatggattggatggat 73  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  9821478 attaacaaattattttgtttgatggatggattggatggat 9821439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 14196617 - 14196578
Alignment:
Q  35 attaacaaat-tttttgtttgatggatggattggatggat 73  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  14196617 attaacaaatatttttgtttgatggatggattggatggat 14196578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 70
Target Start/End: Original strand, 19967118 - 19967147
Alignment:
Q  41 aaattttttgtttgatggatggattggatg 70  Q
    ||||||||||||||||||||||||||||||    
T  19967118 aaattttttgtttgatggatggattggatg 19967147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 5375639 - 5375600
Alignment:
Q  35 attaacaaatttttt-gtttgatggatggattggatggat 73  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  5375639 attaacaaatttttttgtttgatggatggattggatggat 5375600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 73
Target Start/End: Complemental strand, 43323800 - 43323771
Alignment:
Q  44 ttttttgtttgatggatggattggatggat 73  Q
    ||||||||||||||||||||||||||||||    
T  43323800 ttttttgtttgatggatggattggatggat 43323771  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 73
Target Start/End: Original strand, 18264571 - 18264600
Alignment:
Q  44 ttttttgtttgatggatggattggatggat 73  Q
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T  18264571 ttttttgtttgatggatggattggatggat 18264600  T

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