View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1748_low_5 (Length: 465)
Name: NF1748_low_5
Description: NF1748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1748_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 99 - 391
Target Start/End: Original strand, 4170406 - 4170714
Alignment:
| Q |
99 |
aattatccgtcttgagaatcctattgctcaataaacgtcaaacaaacaaagaaacgatcaaatgagctactttattccatttccaagtgatatttaaaat |
198 |
Q |
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| T |
4170406 |
aattatccgtcttgagaatcctattgctcaataaacgtcaaacaaacaaagaaactatcaaatgagctactttattccatttccaagtgatatttaaaat |
4170505 |
T |
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| Q |
199 |
gtgtaaatgatgaacaagctccatattaagtgttgttacattta----------------gtagttcattttcattcacttttgtcaccaaagacttcat |
282 |
Q |
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| T |
4170506 |
gtgtaaatgatgaacaagctccatattaagtgttgttacatttagttcgcttaacgtaatgtagttcatattcattcacttttgtcaccaaagacttcat |
4170605 |
T |
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| Q |
283 |
tagatcatattaattttttcacgaaaggatgaagaaaggtaaacaaaaattatgtattggtgatgcattattagatctattagacatacatgccctaatg |
382 |
Q |
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| T |
4170606 |
tagatcatattaattttttcacgaaaggaggaagaaaggtaaacaaaaattacatattggtgatgcattattagatctattagacatacatgccctaatg |
4170705 |
T |
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| Q |
383 |
gatgtcttt |
391 |
Q |
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| T |
4170706 |
gatgtcttt |
4170714 |
T |
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Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 4170344 - 4170408
Alignment:
| Q |
16 |
atatatgatcaacactttcctccaaaccacaatcactgaaacaaattataaaatctgacatgaat |
80 |
Q |
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| T |
4170344 |
atatatgatcaacactttccttcaaaccacagtcaccgacacaaattataaaatctgacatgaat |
4170408 |
T |
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