View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1748_low_7 (Length: 427)
Name: NF1748_low_7
Description: NF1748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1748_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 16 - 415
Target Start/End: Complemental strand, 22880064 - 22879665
Alignment:
| Q |
16 |
accagcaagacatatatcatatattaaaatatattttatgtgacattaaattttgtgacataacaccatttatatctcttttatgaatgtgactcagcag |
115 |
Q |
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| T |
22880064 |
accagcaagacatatatcatatattaaaatatattttatgtgacattaaattttgtgacataacaccatttatgtctcttttatgaatgtgactcagcag |
22879965 |
T |
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| Q |
116 |
taaaacctttactacccttcaccaacatcaaacatattgttgatgcatgaataaagaaagacaaagatcttgagtttagtttggttgattctggaaatgg |
215 |
Q |
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| T |
22879964 |
taaaacctttactacccttcaccaacatcaaacatattgttgatgcatgaataaagaaagacaaagatcttgagtttagtttggttgattctggaaatgg |
22879865 |
T |
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| Q |
216 |
gttcttggtttcagattttgtctatatgctatttggcatggttcagnnnnnnngttatgaacacagtgagtgatgaaagtggatatgatgaagatgtgaa |
315 |
Q |
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| T |
22879864 |
gttcttggattcagattttgtctatatactatttggcatggttcagtttttttgttgtgaacacagtgagtgatgaaagtggatatgatgaagatgtgaa |
22879765 |
T |
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| Q |
316 |
gaaagggaatgttgtgattgatggtagttctgtgattggaaatattgatgatgattttatttgtgcaactttggattggtggcctcctcagaaatgtgat |
415 |
Q |
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| T |
22879764 |
gaaagggaatgttgtgattgatggtagttctgtgattggaaatattgatgatgattttatttgtgcaactttggattggtggcctcctcagaaatgtgat |
22879665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 350 - 414
Target Start/End: Complemental strand, 47991675 - 47991611
Alignment:
| Q |
350 |
attggaaatattgatgatgattttatttgtgcaactttggattggtggcctcctcagaaatgtga |
414 |
Q |
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| T |
47991675 |
attggaaggattgataatgattttgtttgtgcaactcttgattggtggcctcctcagaaatgtga |
47991611 |
T |
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