View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1748_low_9 (Length: 417)
Name: NF1748_low_9
Description: NF1748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1748_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 24 - 410
Target Start/End: Original strand, 2018685 - 2019071
Alignment:
| Q |
24 |
gctttcgacctcttcctttatagactgtcgttcaaaggaattcaggaactcgatctctgcttggtcactttaatcgaattgccttttggcttctacactt |
123 |
Q |
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| T |
2018685 |
gctttcgacctcttcctttatagactgtcgttcaaaggaattcaggaactcgatctctgcttggtcactttaatcgaattgccttttggcttctacactt |
2018784 |
T |
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| Q |
124 |
gcaataatcttgtcacacttaagctagaaaatgttactttcaaagatggctcttcctatatcaattttccattactcaaatccctaaatttgaacgacgt |
223 |
Q |
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| T |
2018785 |
gcaataatcttgtcacacttaagctagacaatgttactttcaaagatggctcttcctatatcaattttccattactcaaatcccttaatttgaacgacgt |
2018884 |
T |
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| Q |
224 |
cgtctttggaaaccgtgctaacatgttggacnnnnnnngcggatgtcccaatgttgaagatgtagaagtgacttcactatcaatagttaatagtcgcatt |
323 |
Q |
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| T |
2018885 |
cgtctttggaaatcgtgctaacatgtttgactttttttgcggatgtcccaatgttgaagatgtagaagtgacatcactatcaatagttaatagtcgcatt |
2018984 |
T |
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| Q |
324 |
cctcagccaccagaagagggggttgaagccttaccaaagttggtcagagcaaaaatttcagaattatatagcatgttacctttgctt |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2018985 |
cctcagccaccagaagagggggttgaagccttaccaaagttggtcagagcaaaaatttcagaattacatagcatgttacctttgctt |
2019071 |
T |
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