View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17490_high_6 (Length: 315)

Name: NF17490_high_6
Description: NF17490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17490_high_6
NF17490_high_6
[»] chr6 (7 HSPs)
chr6 (1-233)||(15576375-15576607)
chr6 (3-163)||(16526933-16527093)
chr6 (3-166)||(15574544-15574708)
chr6 (17-162)||(12972738-12972883)
chr6 (99-234)||(17860693-17860828)
chr6 (6-126)||(8322602-8322722)
chr6 (256-315)||(16527772-16527828)
[»] chr7 (9 HSPs)
chr7 (6-232)||(21471401-21471628)
chr7 (4-163)||(5722004-5722164)
chr7 (5-128)||(7955796-7955920)
chr7 (256-315)||(7494584-7494643)
chr7 (9-161)||(1074076-1074229)
chr7 (256-315)||(7956058-7956117)
chr7 (260-315)||(21471674-21471729)
chr7 (4-56)||(16166702-16166754)
chr7 (260-315)||(20470993-20471049)
[»] chr8 (11 HSPs)
chr8 (5-236)||(16052557-16052789)
chr8 (3-169)||(28901685-28901851)
chr8 (7-143)||(22894905-22895042)
chr8 (95-236)||(24119925-24120066)
chr8 (2-189)||(12755799-12755987)
chr8 (98-155)||(5570508-5570565)
chr8 (264-308)||(22894724-22894768)
chr8 (256-307)||(28901531-28901582)
chr8 (97-163)||(28292459-28292525)
chr8 (260-314)||(28973519-28973573)
chr8 (5-120)||(17099875-17099990)
[»] chr5 (11 HSPs)
chr5 (5-232)||(24841367-24841594)
chr5 (3-236)||(11274630-11274863)
chr5 (3-163)||(22754557-22754718)
chr5 (3-181)||(17027137-17027316)
chr5 (3-236)||(23125219-23125454)
chr5 (5-146)||(19331173-19331315)
chr5 (256-315)||(24841626-24841685)
chr5 (257-310)||(22754829-22754882)
chr5 (261-308)||(11274548-11274595)
chr5 (281-315)||(11274513-11274547)
chr5 (256-309)||(22644052-22644105)
[»] chr4 (6 HSPs)
chr4 (64-188)||(1696893-1697017)
chr4 (256-315)||(1676478-1676537)
chr4 (256-315)||(1683006-1683065)
chr4 (9-58)||(15787861-15787910)
chr4 (256-315)||(1696750-1696809)
chr4 (256-314)||(34850752-34850810)
[»] chr3 (6 HSPs)
chr3 (3-232)||(11520741-11520971)
chr3 (5-145)||(5632859-5633000)
chr3 (256-315)||(5632673-5632732)
chr3 (256-315)||(13911138-13911197)
chr3 (257-315)||(21017750-21017808)
chr3 (72-120)||(8770880-8770928)
[»] chr1 (10 HSPs)
chr1 (3-83)||(23223139-23223220)
chr1 (256-315)||(21451998-21452057)
chr1 (256-315)||(23223284-23223343)
chr1 (110-232)||(21452099-21452221)
chr1 (256-315)||(31313425-31313484)
chr1 (154-236)||(30675235-30675317)
chr1 (4-80)||(31313020-31313097)
chr1 (5-56)||(27754786-27754837)
chr1 (32-101)||(14397286-14397356)
chr1 (2-56)||(31313107-31313161)
[»] chr2 (9 HSPs)
chr2 (22-128)||(39730111-39730217)
chr2 (3-128)||(22389140-22389265)
chr2 (97-189)||(17415496-17415588)
chr2 (112-232)||(28278704-28278823)
chr2 (256-315)||(28278605-28278664)
chr2 (256-315)||(31449830-31449889)
chr2 (256-315)||(22388939-22388997)
chr2 (260-315)||(39730324-39730379)
chr2 (259-315)||(32276696-32276752)
[»] scaffold0990 (1 HSPs)
scaffold0990 (65-168)||(3134-3237)
[»] scaffold1026 (2 HSPs)
scaffold1026 (22-158)||(2186-2323)
scaffold1026 (258-314)||(2015-2071)
[»] scaffold0282 (1 HSPs)
scaffold0282 (260-315)||(22728-22783)


Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 15576607 - 15576375
Alignment:
Q  1 agaccttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgactgagtgtgacaaatgccttgaccagccccatcggcttt 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  15576607 agaccttgaatgtctatttcgaattgcttcaatctcatagtaaggtacaatcacatgatggctgagtgtgacaaatgccttgaccagccccaccggcttt 15576508  T
Q  101 aggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatggaaatggtaatatagttacgt 200  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  15576507 aggaggtatatacgtgtatcttggaattttatttggttgaaagtaattgtatcttctctaagtttgttcctcttgcatggaaatggtaatatagttacgt 15576408  T
Q  201 ctgatggtgggatgagtgacaatctgagcaaaa 233  Q
    |||| ||||||||||||||||||||||||||||    
T  15576407 ctgacggtgggatgagtgacaatctgagcaaaa 15576375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 3 - 163
Target Start/End: Original strand, 16526933 - 16527093
Alignment:
Q  3 accttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccatcggcttta 101  Q
    ||||||||||||| ||||||||||||| ||| | |||| ||||||||||||||||| |||| |||||||| | ||| ||||||||| ||||  | |||||    
T  16526933 accttgaatgtctgtttagaattgctttaatgttatagaaaggtacaatcacatgacgactggagtgtgaaatatgtcttgaccag-cccactgacttta 16527031  T
Q  102 ggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagt 163  Q
     |||||||||| |||||||||| |||| ||| ||||||||| |||  |||||||||||||||    
T  16527032 agaggtacatatgtgtatcttgaaattgtatgtggttgaaattaagagtatcttctctaagt 16527093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 166
Target Start/End: Original strand, 15574544 - 15574708
Alignment:
Q  3 accttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccatcggcttta 101  Q
    ||||||||||||||| || ||||||||||||||||||| ||| |||||||||||||  | | |||||||  |||||| ||||||||  |||   ||||||    
T  15574544 accttgaatgtctatgtataattgcttcaatctcatagcaagatacaatcacatgacaagtagagtgtggtaaatgctttgaccagtgccacaagcttta 15574643  T
Q  102 ggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttg 166  Q
    | || |||||| ||||||||||||||  ||| |||||||||||||  ||||| ||||||||||||    
T  15574644 gaagatacatatgtgtatcttggaatcatatgtggttgaaagtaagagtatcctctctaagtttg 15574708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 17 - 162
Target Start/End: Complemental strand, 12972883 - 12972738
Alignment:
Q  17 tttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccatcggctttaggaggtacatacgt 115  Q
    |||||||||| ||||||||||||| |||||||||||||||||||| | ||||||| ||||||||||||||||| | | | | |||| || | |||||| |    
T  12972883 tttagaattgattcaatctcatagcaaggtacaatcacatgatgattggagtgtggcaaatgccttgaccagcacta-ctgatttaagaagaacatacat 12972785  T
Q  116 gtatcttggaattttatctggttgaaagtaattgtatcttctctaag 162  Q
    |||||||||||||| |  | |||||||||||  ||||||||||||||    
T  12972784 gtatcttggaatttcaagtagttgaaagtaagggtatcttctctaag 12972738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 234
Target Start/End: Complemental strand, 17860828 - 17860693
Alignment:
Q  99 ttaggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatggaaatggtaatatagttac 198  Q
    |||||||||||||| |||||| || ||||| ||| |||||||||||||  |||| ||||||||   |||||  |||||||||||  |||||  ||||||     
T  17860828 ttaggaggtacatatgtgtatattagaattgtatgtggttgaaagtaagagtatgttctctaaaaatgttccgcttgcatggaagaggtaagctagttaa 17860729  T
Q  199 gtctgatggtgggatgagtgacaatctgagcaaaat 234  Q
    |||||||| ||||  || | | ||||||||||||||    
T  17860728 gtctgatgatgggtggaataaaaatctgagcaaaat 17860693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 126
Target Start/End: Original strand, 8322602 - 8322722
Alignment:
Q  6 ttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgactg-agtgtgacaaatgccttgaccagccccatcggctttagga 104  Q
    |||||||||  |||||||||| |||||  |||||| |||||||| |||| ||| ||||| | || || ||||| | |||||||||| |  | ||||||||    
T  8322602 ttgaatgtccgtttagaattgtttcaaattcatagcaaggtacattcacgtgacgactggaatgaga-aaatgtcgtgaccagcccaactgactttagga 8322700  T
Q  105 ggtacatacgtgtatcttggaa 126  Q
    ||| ||||||||||||||||||    
T  8322701 ggtgcatacgtgtatcttggaa 8322722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 256 - 315
Target Start/End: Original strand, 16527772 - 16527828
Alignment:
Q  256 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgt 315  Q
    |||||||| |||||||||   ||| |||||||||||||| ||||||||||||||||||||    
T  16527772 attctaacgtcttgctat---gttgcttgaggacaagaaccggtttaagtttggggttgt 16527828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 8e-52; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 6 - 232
Target Start/End: Original strand, 21471401 - 21471628
Alignment:
Q  6 ttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgactg-agtgtgacaaatgccttgaccagccccatcggctttagga 104  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| || |||||||||||||||||||||| || |||||||    
T  21471401 ttgaatgtctatttagaattgcttcaatctcatagcaaggtacaatcacatgacgactggagtatggcaaatgccttgaccagccccattggatttagga 21471500  T
Q  105 ggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatggaaatggtaatatagttacgtctga 204  Q
    |  |||||| |||||||||||||| ||  |||||||||||||  ||||| |||||||||||| ||  |||||||| |  ||||||  |||| | || |||    
T  21471501 gacacatacatgtatcttggaattgtacgtggttgaaagtaagagtatcctctctaagtttgatccacttgcatgaaggtggtaagctagtcaagtttga 21471600  T
Q  205 tggtgggatgagtgacaatctgagcaaa 232  Q
    | |||||| || ||||||||||||||||    
T  21471601 tagtgggaggaatgacaatctgagcaaa 21471628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 4 - 163
Target Start/End: Original strand, 5722004 - 5722164
Alignment:
Q  4 ccttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccatcggctttag 102  Q
    ||||||||| ||||||||||||||||||||||||||| ||| |||||||| ||||  ||| |||||||||||||  |||  ||| |||||  | ||||||    
T  5722004 ccttgaatgcctatttagaattgcttcaatctcatagcaagatacaatcaaatgactactggagtgtgacaaatttctttcccatccccactgactttag 5722103  T
Q  103 gaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagt 163  Q
    ||| |||||||||||||||||||||| ||  |||||||||| ||  |||||||||||||||    
T  5722104 gagatacatacgtgtatcttggaattgtaagtggttgaaagcaagagtatcttctctaagt 5722164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 7955796 - 7955920
Alignment:
Q  5 cttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccatcggctttagg 103  Q
    ||||| ||||| ||| ||||||||| | |||||||  |||||||||||||||||||||| ||||| | ||||||||||||  |||||  | |  ||||||    
T  7955796 cttgagtgtctgtttggaattgctttagtctcataacaaggtacaatcacatgatgactggagtggggcaaatgccttgagaagccctgttgaatttagg 7955895  T
Q  104 aggtacatacgtgtatcttggaatt 128  Q
    ||||||| |||||||||||||||||    
T  7955896 aggtacacacgtgtatcttggaatt 7955920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 315
Target Start/End: Original strand, 7494584 - 7494643
Alignment:
Q  256 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgt 315  Q
    ||||| |||||||||||||||||| |||||||||||| ||| ||||||||||| ||||||    
T  7494584 attctgacttcttgctattgtgttgcttgaggacaagcaacagtttaagtttgtggttgt 7494643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 1074076 - 1074229
Alignment:
Q  9 aatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccatcggctttaggaggt 107  Q
    ||||||| |||  ||||||||||||||||||  ||||||||||||||||| | || |||||||  |||||||| ||||   | ||| | |||||||||||    
T  1074076 aatgtctgtttgaaattgcttcaatctcataacaaggtacaatcacatgacgtctggagtgtggaaaatgcctagacctttcacattgactttaggaggt 1074175  T
Q  108 acatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaa 161  Q
    ||||| |||  ||||| ||||  |  || ||||||||||  |||| ||||||||    
T  1074176 acatatgtgcgtcttgtaattggaagtgattgaaagtaagagtatattctctaa 1074229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 315
Target Start/End: Original strand, 7956058 - 7956117
Alignment:
Q  256 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgt 315  Q
    |||||| | ||||| |||| |||| ||| ||||||||||||| |||||||||||||||||    
T  7956058 attctaccgtcttgatattttgttgcttcaggacaagaaacgatttaagtttggggttgt 7956117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 315
Target Start/End: Original strand, 21471674 - 21471729
Alignment:
Q  260 taacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgt 315  Q
    |||||||| |||||||| || |||||||||||  ||| ||||||||||||||||||    
T  21471674 taacttctagctattgtattgcttgaggacaatcaacagtttaagtttggggttgt 21471729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 16166702 - 16166754
Alignment:
Q  4 ccttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacat 56  Q
    |||||||||||| |||||||||| |||||| | ||| || |||||||||||||    
T  16166702 ccttgaatgtctgtttagaattgtttcaattttataatatggtacaatcacat 16166754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 315
Target Start/End: Complemental strand, 20471049 - 20470993
Alignment:
Q  260 taacttcttgctattgtgtttcttgaggac-aagaaacggtttaagtttggggttgt 315  Q
    |||||||||||||| ||||| ||||||||| || ||||  |||||||||||||||||    
T  20471049 taacttcttgctatcgtgttgcttgaggacaaacaaacaatttaagtttggggttgt 20470993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 5e-50; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 5 - 236
Target Start/End: Complemental strand, 16052789 - 16052557
Alignment:
Q  5 cttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgactga-gtgtgacaaatgccttgaccagccccatcggctttagg 103  Q
    ||||||||||| ||| |||||||||||||||||||| ||||||||||||||||| || ||| ||||| ||||||||||||||| |||||   ||||||||    
T  16052789 cttgaatgtctgtttcgaattgcttcaatctcatagcaaggtacaatcacatgacgattgaagtgtggcaaatgccttgaccaaccccactagctttagg 16052690  T
Q  104 aggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatggaaatggtaatatagttacgtctg 203  Q
    ||||||||||| ||||||||||||| ||| |||||||||||||   |||  ||| ||||| |||||| ||||||| ||| ||||||  |||||| || ||    
T  16052689 aggtacatacgcgtatcttggaattgtatgtggttgaaagtaagaatatactctttaagtctgttcagcttgcatagaagtggtaagctagttaagtttg 16052590  T
Q  204 atggtgggatgagtgacaatctgagcaaaatct 236  Q
    ||| ||||| ||||| |||||||||| ||||||    
T  16052589 atgatgggaagagtggcaatctgagccaaatct 16052557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 3 - 169
Target Start/End: Complemental strand, 28901851 - 28901685
Alignment:
Q  3 accttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgactga-gtgtgacaaatgccttgaccagccccatcggcttta 101  Q
    ||||| || ||||||||||||| ||||||||||| ||| ||| ||||||||||||| |||  | | ||||||||| ||||||||| |||||  || ||||    
T  28901851 accttaaaagtctatttagaat-gcttcaatctcgtagcaagatacaatcacatgacgacaaacgagtgacaaattccttgaccaaccccaatggtttta 28901753  T
Q  102 ggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttc 169  Q
    |||| |||||||||||||||||||||| ||| |||||||||||||  |||||||||||||| ||||||    
T  28901752 ggagatacatacgtgtatcttggaattgtatgtggttgaaagtaagagtatcttctctaagcttgttc 28901685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 7 - 143
Target Start/End: Complemental strand, 22895042 - 22894905
Alignment:
Q  7 tgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgactg-agtgtgacaaatgccttgaccagccccatcggctttaggag 105  Q
    ||||||||| |||||||| ||||||||||||||| |||||||||||| | ||  |||| |||||| ||||||||||||| |||| ||   ||||||||||    
T  22895042 tgaatgtctgtttagaatggcttcaatctcatagaaaggtacaatcatacgacaactggagtgtggcaaatgccttgactagcctcactagctttaggag 22894943  T
Q  106 gtacatacgtgtatcttggaattttatctggttgaaag 143  Q
     ||||||||||| |||||||||| ||| ||||||||||    
T  22894942 atacatacgtgtgtcttggaattgtatgtggttgaaag 22894905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 95 - 236
Target Start/End: Original strand, 24119925 - 24120066
Alignment:
Q  95 ggctttaggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatggaaatggtaatatag 194  Q
    |||||| | ||||||||||||||||||||||||| ||| | ||| |||||||  ||||||||||| ||| |||||  ||||||||||| ||||||  |||    
T  24119925 ggctttggcaggtacatacgtgtatcttggaattatatgtcgtttaaagtaagagtatcttctcttagtctgttctgcttgcatggaagtggtaagctag 24120024  T
Q  195 ttacgtctgatggtgggatgagtgacaatctgagcaaaatct 236  Q
    |||   ||| |||||| | |||||||||||||||| ||||||    
T  24120025 ttaaacctgttggtggaaagagtgacaatctgagccaaatct 24120066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 2 - 189
Target Start/End: Original strand, 12755799 - 12755987
Alignment:
Q  2 gaccttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgactgag-tgtgacaaatgccttgaccagccccatcggcttt 100  Q
    |||||||||||||| ||||||||| ||| ||||  |||| ||||||||| || |||| || |||  |||||||||||  ||||||| | |||   |||||    
T  12755799 gaccttgaatgtctgtttagaattcctttaatcctatagcaaggtacaaccatatgacgaatgaaatgtgacaaatgttttgaccaactccactagcttt 12755898  T
Q  101 aggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatggaaatggtaa 189  Q
    | ||| |||||| || |||||||||||| || | ||||||||||||  ||||||||||||||  ||| |  ||||||||||| ||||||    
T  12755899 atgagatacatatgtatatcttggaattgtaaccggttgaaagtaagagtatcttctctaagaatgtcccacttgcatggaagtggtaa 12755987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 155
Target Start/End: Complemental strand, 5570565 - 5570508
Alignment:
Q  98 tttaggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatctt 155  Q
    |||||||| || |||||||||||||| |||| ||| |||||||||||||| |||||||    
T  5570565 tttaggagatatatacgtgtatcttgaaattgtatgtggttgaaagtaatagtatctt 5570508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 308
Target Start/End: Complemental strand, 22894768 - 22894724
Alignment:
Q  264 ttcttgctattgtgtttcttgaggacaagaaacggtttaagtttg 308  Q
    |||||||||||||||||||||||||||||  || |||||||||||    
T  22894768 ttcttgctattgtgtttcttgaggacaagggacagtttaagtttg 22894724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 307
Target Start/End: Complemental strand, 28901582 - 28901531
Alignment:
Q  256 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagttt 307  Q
    ||||||||||||||||| |||||| |||||| ||||| |||| |||||||||    
T  28901582 attctaacttcttgctactgtgttgcttgagaacaagcaacgatttaagttt 28901531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 163
Target Start/End: Complemental strand, 28292525 - 28292459
Alignment:
Q  97 ctttaggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagt 163  Q
    |||||||||||| ||||||||||||| ||||| ||  ||||||||| |||  ||||||||| |||||    
T  28292525 ctttaggaggtagatacgtgtatctttgaattataagtggttgaaattaagagtatcttctttaagt 28292459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 314
Target Start/End: Complemental strand, 28973573 - 28973519
Alignment:
Q  260 taacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttg 314  Q
    |||||||||| |||||||||||||   |||||| ||| |||||||||||||||||    
T  28973573 taacttcttgttattgtgtttcttaccgacaagcaactgtttaagtttggggttg 28973519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 17099875 - 17099990
Alignment:
Q  5 cttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgactg-agtgtgacaaatgccttgaccagccccatcggctttagg 103  Q
    ||||| ||||| |||||||||| |||||  | |||| |||||||| |||  ||| ||||| |||| ||||||||   |||||||||| |  |||||||||    
T  17099875 cttgattgtctgtttagaattgtttcaaatttatagcaaggtacattcatgtgacgactggagtg-gacaaatggtgtgaccagccctactggctttagg 17099973  T
Q  104 aggtacatacgtgtatc 120  Q
    || ||||||||||||||    
T  17099974 agatacatacgtgtatc 17099990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 5 - 232
Target Start/End: Original strand, 24841367 - 24841594
Alignment:
Q  5 cttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccatcggctttagg 103  Q
    ||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||| ||||||||||||||| |  |||||||    
T  24841367 cttgaatgtttgtttagaattgcttcaatctcatagtaaggtccaatcacatgatgactaaagtgtgacaaatcccttgaccagcccca-cttctttagg 24841465  T
Q  104 aggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatggaaatggtaatatagttacgtctg 203  Q
     | |||||| ||||||||||||||| ||| |||||||||||||  |||||||| ||||| || |||  ||||||||||| ||||||  |||| | ||| |    
T  24841466 tgatacatatgtgtatcttggaattgtatgtggttgaaagtaagagtatcttccctaagcttcttctacttgcatggaagtggtaagctagtcaagtcag 24841565  T
Q  204 atggtgggatgagtgacaatctgagcaaa 232  Q
    || ||| || || | ||||||||||||||    
T  24841566 atagtgagaagaataacaatctgagcaaa 24841594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 3 - 236
Target Start/End: Complemental strand, 11274863 - 11274630
Alignment:
Q  3 accttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccatcggcttta 101  Q
    ||||||||||| | ||| |||| |||||||| ||||||||||||| ||||||||||  ||| |||||||||||| |||||||||| |||| | |||||||    
T  11274863 accttgaatgtttgtttggaatcgcttcaatttcatagtaaggtaaaatcacatgacaactagagtgtgacaaacgccttgaccatccccct-ggcttta 11274765  T
Q  102 ggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatggaaatggtaatatagttacgtc 201  Q
    |||| ||| || ||||||||||||||| ||| |||||||||||||  |||||||||| |||| |||||  |||||||| ||   ||||  |||||| |||    
T  11274764 ggagatacctatgtgtatcttggaattgtatgtggttgaaagtaaaagtatcttctcaaagtctgttctgcttgcatgaaagcagtaagctagttaagtc 11274665  T
Q  202 tgatggtgggatgagtgacaatctgagcaaaatct 236  Q
    ||||||||| | || ||||||| ||||||||||||    
T  11274664 tgatggtggaaagaatgacaatatgagcaaaatct 11274630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 3 - 163
Target Start/End: Original strand, 22754557 - 22754718
Alignment:
Q  3 accttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgactg-agtgtgacaaatgccttgaccagccccatcggcttta 101  Q
    |||||||||| || ||||||||| ||||||||| |||| ||||||||||||||||| ||||| |||||| ||||||| ||||||| ||| || | |||||    
T  22754557 accttgaatgcctgtttagaatttcttcaatcttatagcaaggtacaatcacatgacgactggagtgtggcaaatgctttgaccaaccctattgacttta 22754656  T
Q  102 ggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagt 163  Q
    |||||||||||||||||||||||||| |||| |||||||||||||   |||| |||||||||    
T  22754657 ggaggtacatacgtgtatcttggaatattatatggttgaaagtaagaatatcctctctaagt 22754718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 3 - 181
Target Start/End: Original strand, 17027137 - 17027316
Alignment:
Q  3 accttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgactg-agtgtgacaaatgccttgaccagccccatcggcttta 101  Q
    ||||||| ||||| |||| |||||||| ||| |||||| |||| |||||||||||| ||||| ||| |||||||||| |||| ||||||||   ||||||    
T  17027137 accttgagtgtctgtttataattgcttaaatgtcataggaaggaacaatcacatgacgactggagtatgacaaatgcattgatcagccccactagcttta 17027236  T
Q  102 ggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatgga 181  Q
    |||||||||||| |||||||||||||| ||  ||||||||| |||  ||||||||||||| | |||||  ||||||||||    
T  17027237 ggaggtacatacatgtatcttggaattgtacgtggttgaaaataagagtatcttctctaactgtgttccgcttgcatgga 17027316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 236
Target Start/End: Complemental strand, 23125454 - 23125219
Alignment:
Q  3 accttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccatcggcttta 101  Q
    ||||||| ||| | |||||||||| |||||||||| || || ||||||||||||||  ||| ||||||| ||| | ||||||||| |||||    |||||    
T  23125454 accttgagtgtatgtttagaattgtttcaatctcacagcaaagtacaatcacatgacaactggagtgtggcaagttccttgaccaaccccactatcttta 23125355  T
Q  102 ggaggtacatacgtgtatcttggaattttatctggttgaaagtaat-tgtatcttctctaagtttgttcatcttgcatggaaatggtaatatagttacgt 200  Q
     |||||||||| ||||||||||||||| ||  || ||| |||||||  |||||||||||||| |||| |  ||||||||||| ||||||  |||| | ||    
T  23125354 tgaggtacatatgtgtatcttggaattgtaagtgattggaagtaataagtatcttctctaagcttgtcccgcttgcatggaagtggtaagttagtcaagt 23125255  T
Q  201 ctgatggtgggatgagtgacaatctgagcaaaatct 236  Q
    |||   |||||| || ||||||| |||||| |||||    
T  23125254 ctggaagtgggaagaatgacaatatgagcacaatct 23125219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 5 - 146
Target Start/End: Original strand, 19331173 - 19331315
Alignment:
Q  5 cttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccatcggctttagg 103  Q
    ||||||||||| | || |||||||||||||||| || |||||| |||||||||| | || ||||||||||||||| || |||| ||  |  |  ||||||    
T  19331173 cttgaatgtctctatataattgcttcaatctcaaagcaaggtagaatcacatgacggctggagtgtgacaaatgctttcaccaaccatactgattttagg 19331272  T
Q  104 aggtacatacgtgtatcttggaattttatctggttgaaagtaa 146  Q
    ||||||||| |||||| |||||||| ||  |||||||||||||    
T  19331273 aggtacatatgtgtattttggaattgtaagtggttgaaagtaa 19331315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 315
Target Start/End: Original strand, 24841626 - 24841685
Alignment:
Q  256 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgt 315  Q
    |||||||||||||| |||||||||||||||||||||| ||| || || || |||||||||    
T  24841626 attctaacttcttgttattgtgtttcttgaggacaagcaacagtgtacgtatggggttgt 24841685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 257 - 310
Target Start/End: Original strand, 22754829 - 22754882
Alignment:
Q  257 ttctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggg 310  Q
    ||||||||| ||||||||||||| |||| |||||||||||  ||||||||||||    
T  22754829 ttctaactttttgctattgtgttgcttgtggacaagaaacattttaagtttggg 22754882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 261 - 308
Target Start/End: Complemental strand, 11274595 - 11274548
Alignment:
Q  261 aacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttg 308  Q
    |||||||||||| |||||| |||||||||||| ||| |||||||||||    
T  11274595 aacttcttgctactgtgttgcttgaggacaagtaacagtttaagtttg 11274548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 315
Target Start/End: Complemental strand, 11274547 - 11274513
Alignment:
Q  281 cttgaggacaagaaacggtttaagtttggggttgt 315  Q
    |||||||||||| ||||||||||||||||||||||    
T  11274547 cttgaggacaagcaacggtttaagtttggggttgt 11274513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 309
Target Start/End: Complemental strand, 22644105 - 22644052
Alignment:
Q  256 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttgg 309  Q
    |||| |||||||||| ||| |||| |||||||| ||| ||||||||||||||||    
T  22644105 attccaacttcttgccattttgttgcttgaggataagcaacggtttaagtttgg 22644052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 64 - 188
Target Start/End: Complemental strand, 1697017 - 1696893
Alignment:
Q  64 gagtgtgacaaatgccttgaccagccccatcggctttaggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagt 163  Q
    ||||||| |||||||||||||||||||||  |||||||| ||||||||| ||||||||||||||| ||| |||||||||||||  ||||| |||||||||    
T  1697017 gagtgtggcaaatgccttgaccagccccactggctttagaaggtacatatgtgtatcttggaattgtatgtggttgaaagtaaaagtatcctctctaagt 1696918  T
Q  164 ttgttcatcttgcatggaaatggta 188  Q
    ||||||  ||||||||||| |||||    
T  1696917 ttgttctgcttgcatggaagtggta 1696893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 315
Target Start/End: Complemental strand, 1676537 - 1676478
Alignment:
Q  256 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgt 315  Q
    ||||||||||||||||| |||||| ||||| |||| | ||| ||||||||||||||||||    
T  1676537 attctaacttcttgctactgtgttgcttgaagacatgcaacagtttaagtttggggttgt 1676478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 315
Target Start/End: Complemental strand, 1683065 - 1683006
Alignment:
Q  256 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgt 315  Q
    ||||||||||||||||| |||||| ||||| |||| | ||| ||||||||||||||||||    
T  1683065 attctaacttcttgctactgtgttgcttgaagacatgcaacagtttaagtttggggttgt 1683006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 15787910 - 15787861
Alignment:
Q  9 aatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatga 58  Q
    |||||||||||| ||||| ||||||||||||| |||||||||||| ||||    
T  15787910 aatgtctatttaaaattgattcaatctcatagcaaggtacaatcaaatga 15787861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 315
Target Start/End: Complemental strand, 1696809 - 1696750
Alignment:
Q  256 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgt 315  Q
    ||||||||||||||||| |||||| ||||| || ||| ||| ||||||||||| ||||||    
T  1696809 attctaacttcttgctactgtgttgcttgaagataagcaacagtttaagtttgaggttgt 1696750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 314
Target Start/End: Original strand, 34850752 - 34850810
Alignment:
Q  256 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttg 314  Q
    |||||||||||||| |||||||||||||| | ||||| ||| |||||| ||||| ||||    
T  34850752 attctaacttcttgttattgtgtttcttgcgaacaagcaacagtttaaatttggagttg 34850810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 3 - 232
Target Start/End: Original strand, 11520741 - 11520971
Alignment:
Q  3 accttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccatcggcttta 101  Q
    |||||||||||||  ||| ||||||||||||||||||| |||||||||||| |||| |||| ||||||| |||||||||||||||| ||||   | ||||    
T  11520741 accttgaatgtctgcttataattgcttcaatctcatagcaaggtacaatcatatgacgactagagtgtggcaaatgccttgaccagtcccactagattta 11520840  T
Q  102 ggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatggaaatggtaatatagttacgtc 201  Q
    | || |||||||||||||||| ||||| | | |||||||||||||  |||||  |||||||||||  |   ||| |||||  ||||||  |||| | ||     
T  11520841 gaagatacatacgtgtatctttgaattgtttgtggttgaaagtaagagtatccactctaagtttgaactggttgtatggatgtggtaagctagtcaagtt 11520940  T
Q  202 tgatggtgggatgagtgacaatctgagcaaa 232  Q
    |||| |||||| || ||||||||||||||||    
T  11520941 tgatagtgggaggaatgacaatctgagcaaa 11520971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 145
Target Start/End: Complemental strand, 5633000 - 5632859
Alignment:
Q  5 cttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgactg-agtgtgacaaatgccttgaccagccccatcggctttagg 103  Q
    ||||||||| | ||||||||||||||||||| || | |||||| ||| |||| | ||||| |||||||||||| ||||||  |   | | || |||||||    
T  5633000 cttgaatgtatgtttagaattgcttcaatctaattgcaaggtataattacattacgactgcagtgtgacaaattccttgattatgtctaccgactttagg 5632901  T
Q  104 aggtacatacgtgtatcttggaattttatctggttgaaagta 145  Q
    ||||||||||||||||||||||||| ||  ||||||||||||    
T  5632900 aggtacatacgtgtatcttggaattgtaagtggttgaaagta 5632859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 315
Target Start/End: Complemental strand, 5632732 - 5632673
Alignment:
Q  256 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgt 315  Q
    ||||||||||||||| ||| |||| |||| ||||||| ||||||||||||||||||||||    
T  5632732 attctaacttcttgccattttgttgcttggggacaagcaacggtttaagtttggggttgt 5632673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 315
Target Start/End: Original strand, 13911138 - 13911197
Alignment:
Q  256 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgt 315  Q
    |||||||||| ||||||||||||| ||| |||||||| |||||||||||||| |||||||    
T  13911138 attctaacttattgctattgtgttactttaggacaagcaacggtttaagtttagggttgt 13911197  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 315
Target Start/End: Original strand, 21017750 - 21017808
Alignment:
Q  257 ttctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgt 315  Q
    ||||||||||||| ||||||||| ||| |||||||| |||| |||||||||| ||||||    
T  21017750 ttctaacttcttgttattgtgttgcttaaggacaagcaacgatttaagtttgaggttgt 21017808  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 8770928 - 8770880
Alignment:
Q  72 caaatgccttgaccagccccatcggctttaggaggtacatacgtgtatc 120  Q
    |||||||| |||||||||| |  ||||||||||| ||||||||||||||    
T  8770928 caaatgccgtgaccagccctactggctttaggagatacatacgtgtatc 8770880  T

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Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 23223139 - 23223220
Alignment:
Q  3 accttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttga 83  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| || | ||||||| ||||||||||||    
T  23223139 accttgaatgtctatttagaattgctttaatctcatagcaaggtacaatcacatgacgattggagtgtggcaaatgccttga 23223220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 256 - 315
Target Start/End: Complemental strand, 21452057 - 21451998
Alignment:
Q  256 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgt 315  Q
    ||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||    
T  21452057 attctaacttcttgctattgtgtttcttgaggacaagtaatagtttaagtttggggttgt 21451998  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 315
Target Start/End: Original strand, 23223284 - 23223343
Alignment:
Q  256 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgt 315  Q
    ||||||||||||| |||||||||| ||| ||||||||||||  |||||||||||||||||    
T  23223284 attctaacttctttctattgtgttgcttaaggacaagaaacaatttaagtttggggttgt 23223343  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 110 - 232
Target Start/End: Complemental strand, 21452221 - 21452099
Alignment:
Q  110 atacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatggaaatggtaatatagttacgtctgatggtg 209  Q
    ||||||||||||| ||||| ||| |||||||||||||  ||||| ||||||| |||| ||  ||||||||||  ||||||  |||| | || |||| |||    
T  21452221 atacgtgtatctttgaattgtatgtggttgaaagtaagagtatcctctctaaatttgatctgcttgcatggaggtggtaacctagtcaagtttgatagtg 21452122  T
Q  210 ggatgagtgacaatctgagcaaa 232  Q
    ||| || ||| ||||||||||||    
T  21452121 ggaggaatgaaaatctgagcaaa 21452099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 315
Target Start/End: Original strand, 31313425 - 31313484
Alignment:
Q  256 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgt 315  Q
    ||||||| ||||||||||| |||| | |||||||||| ||| ||||||||||||||||||    
T  31313425 attctaatttcttgctattttgttgcctgaggacaagcaacagtttaagtttggggttgt 31313484  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 236
Target Start/End: Original strand, 30675235 - 30675317
Alignment:
Q  154 ttctctaagtttgttcatcttgcatggaaatggtaatatagttacgtctgatggtgggatgagtgacaatctgagcaaaatct 236  Q
    |||| |||||||||||   |||||| ||| ||||||  |||||| || ||||||||||| || ||||||||||||||||||||    
T  30675235 ttctataagtttgttccaattgcatagaagtggtaagttagttaagtttgatggtgggaagaatgacaatctgagcaaaatct 30675317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 31313020 - 31313097
Alignment:
Q  4 ccttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgcct 80  Q
    |||||| |||||||||||||||| || |||||||||| |||||||||| |||| | || | ||||||| |||||||||    
T  31313020 ccttgattgtctatttagaattggtttaatctcatagcaaggtacaataacatcacgattggagtgtggcaaatgcct 31313097  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 27754786 - 27754837
Alignment:
Q  5 cttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacat 56  Q
    ||||||| ||| |||||||||| |||||| ||||||||| ||||||||||||    
T  27754786 cttgaatttctgtttagaattgtttcaatatcatagtaacgtacaatcacat 27754837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 14397286 - 14397356
Alignment:
Q  32 atctcatagtaaggtacaatcacatgatgactg-agtgtgacaaatgccttgaccagccccatcggcttta 101  Q
    ||||||||| ||||||||||||||||| ||| | |||||| ||||| |||||||||| | ||| |||||||    
T  14397286 atctcatagcaaggtacaatcacatgacgacggtagtgtggcaaataccttgaccagtctcattggcttta 14397356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 31313161 - 31313107
Alignment:
Q  2 gaccttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacat 56  Q
    |||||||| ||||||||||||||||||| |||||||||   ||||||||| ||||    
T  31313161 gaccttgattgtctatttagaattgctttaatctcataaccaggtacaataacat 31313107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 39730111 - 39730217
Alignment:
Q  22 aattgcttcaatctcatagtaaggtacaatcacatgatgac-tgagtgtgacaaatgccttgaccagccccatcggctttaggaggtacatacgtgtatc 120  Q
    |||||| ||||||||||||||| ||||||||||| |||||| |||||||| ||||| |||||||||| | ||  ||||||||||||||||||| ||||||    
T  39730111 aattgcatcaatctcatagtaatgtacaatcacacgatgacttgagtgtggcaaataccttgaccag-ctcactggctttaggaggtacatacatgtatc 39730209  T
Q  121 ttggaatt 128  Q
    ||| ||||    
T  39730210 ttgaaatt 39730217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 128
Target Start/End: Complemental strand, 22389265 - 22389140
Alignment:
Q  3 accttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgactgagtgtgacaaatgccttgaccagccccatcggctttag 102  Q
    ||||||||||| | |||| |||| ||||||| |||||| |||||||| |||||||| ||||| ||||| ||||| |||||||||||| ||    ||||||    
T  22389265 accttgaatgtttgtttataattacttcaatttcatagcaaggtacagtcacatgacgactgggtgtggcaaataccttgaccagcctcactacctttag 22389166  T
Q  103 gaggtacatacgtgtatcttggaatt 128  Q
    ||||||||  | |||| |||||||||    
T  22389165 gaggtacaatcctgtagcttggaatt 22389140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 189
Target Start/End: Complemental strand, 17415588 - 17415496
Alignment:
Q  97 ctttaggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatggaaatggtaa 189  Q
    ||||||||||||||||||||||||||||||||     | |||||||||||  ||||||| |||||||||||||  ||||| ||||| ||||||    
T  17415588 ctttaggaggtacatacgtgtatcttggaattgggaatagttgaaagtaagagtatcttttctaagtttgttccacttgcgtggaagtggtaa 17415496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 232
Target Start/End: Complemental strand, 28278823 - 28278704
Alignment:
Q  112 acgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatggaaatggtaatatagttacgtctgatggtggg 211  Q
    ||||||||||||||||| ||| ||||| |||||||  ||||||||||||| ||||||   ||||||||||| ||||||  |||| |  |||||| |||||    
T  28278823 acgtgtatcttggaattctatgtggttaaaagtaagagtatcttctctaactttgtttcgcttgcatggaagtggtaaactagtcaaatctgatagtggg 28278724  T
Q  212 atgagtgacaatctgagcaaa 232  Q
    | || ||||||| ||||||||    
T  28278723 a-gaatgacaatatgagcaaa 28278704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 315
Target Start/End: Complemental strand, 28278664 - 28278605
Alignment:
Q  256 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgt 315  Q
    |||||||||||||||||||||||| |||||||||||| |||  ||||||||| |||||||    
T  28278664 attctaacttcttgctattgtgttgcttgaggacaagcaacactttaagttttgggttgt 28278605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 315
Target Start/End: Original strand, 31449830 - 31449889
Alignment:
Q  256 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgt 315  Q
    ||||| ||||||||||| | |||| |||||||||||| ||| ||||||||||||||||||    
T  31449830 attctgacttcttgctaatttgttacttgaggacaagcaacagtttaagtttggggttgt 31449889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 315
Target Start/End: Complemental strand, 22388997 - 22388939
Alignment:
Q  256 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgt 315  Q
    ||||||||||||||||||| | |||||||| |||||| |||| | |||||||||||||||    
T  22388997 attctaacttcttgctatttt-tttcttgatgacaagcaacgatataagtttggggttgt 22388939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 315
Target Start/End: Original strand, 39730324 - 39730379
Alignment:
Q  260 taacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgt 315  Q
    ||||||||||||||| |||| |||||||||||  |||  |||||||||||||||||    
T  39730324 taacttcttgctattttgttgcttgaggacaaataacattttaagtttggggttgt 39730379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 315
Target Start/End: Complemental strand, 32276752 - 32276696
Alignment:
Q  259 ctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgt 315  Q
    |||| |||||| |||| |||| | | |||||||||||| ||||||||||||||||||    
T  32276752 ctaagttcttgttattttgttgcgtaaggacaagaaaccgtttaagtttggggttgt 32276696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0990 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0990
Description:

Target: scaffold0990; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 168
Target Start/End: Original strand, 3134 - 3237
Alignment:
Q  65 agtgtgacaaatgccttgaccagccccatcggctttaggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtt 164  Q
    ||||||||||||||||||||||  ||||   |  ||||||| |||||| |||||||||| |||| ||| |||||||||||||  ||||| | ||||||||    
T  3134 agtgtgacaaatgccttgaccaatcccactagtcttaggagatacatatgtgtatcttgaaattgtatgtggttgaaagtaagagtatcctttctaagtt 3233  T
Q  165 tgtt 168  Q
    ||||    
T  3234 tgtt 3237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1026 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold1026
Description:

Target: scaffold1026; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 158
Target Start/End: Complemental strand, 2323 - 2186
Alignment:
Q  22 aattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccatcggctttaggaggtacatacgtgtatc 120  Q
    |||| ||||||| |||||| || |||||||||||||| |||| ||||||| ||||| || | |||| |  ||  ||||||||||||||||||| ||| ||    
T  2323 aattacttcaatttcatagcaaagtacaatcacatgacgacttgagtgtggcaaataccgtaaccatctgcactggctttaggaggtacatacatgtgtc 2224  T
Q  121 ttggaattttatctggttgaaagtaattgtatcttctc 158  Q
    ||| | || ||  |||||||||||||  ||||||||||    
T  2223 ttgaatttgtacgtggttgaaagtaagagtatcttctc 2186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1026; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 314
Target Start/End: Complemental strand, 2071 - 2015
Alignment:
Q  258 tctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttg 314  Q
    ||||||||||||||||| | || ||||| |||||| |||| ||||||||||||||||    
T  2071 tctaacttcttgctatttttttgcttgatgacaagtaacgttttaagtttggggttg 2015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 315
Target Start/End: Complemental strand, 22783 - 22728
Alignment:
Q  260 taacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgt 315  Q
    |||||||||||||||||||| ||||||| |||| |||  |||||||||||||||||    
T  22783 taacttcttgctattgtgttgcttgagggcaagcaacactttaagtttggggttgt 22728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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