View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17491_high_1 (Length: 547)
Name: NF17491_high_1
Description: NF17491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17491_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 10 - 528
Target Start/End: Original strand, 6462370 - 6462888
Alignment:
| Q |
10 |
cgagtgagatgaaggacttggacctaagggaggaaaaatcttggaggataacgcagtcagagacttgattgaggatgttatnnnnnnnntggaagacaat |
109 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
6462370 |
cgagtgaaaagaaggacttggacctaagggaggaaaaatcttggaggataacgcagtcagagacttgattgaggatgttataaaaaaaatggaagacaat |
6462469 |
T |
|
| Q |
110 |
aagaaagctgatgagaaggaagaactagaaatggaacaaagttggtgacgaggaaggaatgaaagaggataagaaagttgacaaagggaaataattaaaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6462470 |
aagaaagctgatgagaaggaagaactagaaatggaacaaagttggtgacgaggaaggaatgaaagaggataagaaagttgacaaagggaaataattaaaa |
6462569 |
T |
|
| Q |
210 |
gaggatgggaaaatgttggtaggaaagaaccagaagatgataagaaatattattttgtgaataaaacggaagaaaataagaaatgcgataatgggtttga |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6462570 |
gaggatgggaaaatgttggtaggaaagaaccagaagatgataagaaatattattttgtgaataaaacggaagaaaataagaaatgcgataatgggtttga |
6462669 |
T |
|
| Q |
310 |
ggatgataaattgtgagaagaaacttaggttaaggaaactatgaatgtaaagaagagagagaaattgttgaagctaagaaatccgaattagaagtcatgg |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6462670 |
ggatgataaattgtgagaagaaacttaggttaaggaaactatgaatgtaaagaagagagagaaattattgaagctaagaaatccgaattagaagtcatgg |
6462769 |
T |
|
| Q |
410 |
aagaaaagagtaaccctcaagacatagatcgggacaatgaaaaggagaaaaatcaagagaggacggattatcatgttaaggttaatgataagtcaaacga |
509 |
Q |
| |
|
||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| || |
|
|
| T |
6462770 |
aagaagagagtatccctcaaaacatagatcgggacaatgaaaaggagaaaaatcaagagagggcggattatcaggttaaggttaatgataagtcaaatga |
6462869 |
T |
|
| Q |
510 |
tgaagataaggtacaagac |
528 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
6462870 |
tgaagataaggtacaagac |
6462888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 377 - 467
Target Start/End: Original strand, 42252346 - 42252436
Alignment:
| Q |
377 |
ttgaagctaagaaatccgaattagaagtcatggaagaaaagagtaaccctcaagacatagatcgggacaatgaaaaggagaaaaatcaaga |
467 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||| || |||| |||||| ||| || || |||||||||||||| |||||| |
|
|
| T |
42252346 |
ttgaagctaagaaacccgaattagaagtcatggaagaagagattatccctgaagacaacgatgagggcagtgaaaaggagaaaagtcaaga |
42252436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 144
Target Start/End: Original strand, 41847161 - 41847297
Alignment:
| Q |
9 |
tcgagtgagatgaaggacttgga-cctaagggaggaaaaatcttggaggataacgcagtcagagacttgattgaggatgttatnnnnnnnntggaagaca |
107 |
Q |
| |
|
|||||||| | ||||||| |||| |||||||||||||||||||| |||||||| || ||| ||| |||| ||||||| ||| |||||| |
|
|
| T |
41847161 |
tcgagtgaaaagaaggacctggaacctaagggaggaaaaatctttgaggataatgctgtccaagatttgaaagaggatggtataaaagcaatggaagttg |
41847260 |
T |
|
| Q |
108 |
ataagaaagctgatgagaaggaagaactagaaatgga |
144 |
Q |
| |
|
||||||||||||||| | |||||| |||||||||||| |
|
|
| T |
41847261 |
ataagaaagctgatggggaggaagtactagaaatgga |
41847297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 42252149 - 42252209
Alignment:
| Q |
161 |
ggaaggaatgaaagaggataagaaagttgacaaagggaaataattaaaagaggatgggaaa |
221 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||| || ||||||||||| |||| |
|
|
| T |
42252149 |
ggaaggaataaaagaggataagaaagttgatgaagggaaagaaacaaaagaggatgagaaa |
42252209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 421
Target Start/End: Original strand, 41847894 - 41847959
Alignment:
| Q |
356 |
gtaaagaagagagagaaattgttgaagctaagaaatccgaattagaagtcatggaagaaaagagta |
421 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| | |||||||| | |||||| ||| |||||| |
|
|
| T |
41847894 |
gtaaagaagagagagaaagcgttgaagctaagaagcctgaattagatgccatggatgaagagagta |
41847959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 314
Target Start/End: Original strand, 42252239 - 42252292
Alignment:
| Q |
261 |
attttgtgaataaaacggaagaaaataagaaatgcgataatgggtttgaggatg |
314 |
Q |
| |
|
||||||||||| |||| ||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
42252239 |
attttgtgaatgaaacagaagaaaataagaaaaatgatcatgggtttgaggatg |
42252292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University