View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17491_high_4 (Length: 360)
Name: NF17491_high_4
Description: NF17491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17491_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 160 - 350
Target Start/End: Original strand, 45051109 - 45051299
Alignment:
| Q |
160 |
ctaacacatcttttcacaatcaaactcgtgatcatgcggttaagagcttcaaatatcgactaannnnnnnnnactaaaacaatggctactatttttattt |
259 |
Q |
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| T |
45051109 |
ctaacacatcttttcacaatcaaactcgtgatcatgcggttaagagcttcaaatatcgactaatttttttttactaaaacaatggctactatttttattt |
45051208 |
T |
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| Q |
260 |
ttagtagcataaaaactatcaactatttggatcacacttttggtaaaatgacaaatatattgattgaagagtgtgaaaattgttacctttg |
350 |
Q |
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| T |
45051209 |
ttagtagcataaaaattatcaactatttggatcacacttttggtaaaatgacaaatatattgattgaagagtgtgaaaattgttacctttg |
45051299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 45050927 - 45051071
Alignment:
| Q |
19 |
gaaatactagtggttatacaaacgtgtttatttttgtgtgtttaaacacgaaagttcatttgttttaaattaaataatttaaaatcttacacaaacataa |
118 |
Q |
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| T |
45050927 |
gaaatactagtggttatacaaacgtgtttatttttgtgtgtttaaacacaaaagttcatttgttttaaattaaataatttaaaatcttacacaaacataa |
45051026 |
T |
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| Q |
119 |
tttaaaacatcatagccaatttcttacttgcaaaaagggatctaa |
163 |
Q |
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| T |
45051027 |
tttaaaacatcataaccaatttcttacttgcaaaaagggatctaa |
45051071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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