View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17491_low_2 (Length: 480)

Name: NF17491_low_2
Description: NF17491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17491_low_2
NF17491_low_2
[»] chr2 (2 HSPs)
chr2 (14-462)||(34439125-34439575)
chr2 (19-353)||(34422272-34422608)


Alignment Details
Target: chr2 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 14 - 462
Target Start/End: Original strand, 34439125 - 34439575
Alignment:
Q  14 aagaatgaacgaaccaatcatacaaccagtaaagaaaacagcttgaacaagtccaactttaaacttgtcaccacatatcaaactccactcagtcaccgta 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34439125 aagaatgaacgaaccaatcatacaaccagtaaagaaaacagcttgaacaagtccaactttaaacttgtcaccacatatcaaactccactcagtcaccgta 34439224  T
Q  114 gaagcatctttccctccgatccactcccacgacgacgacgccatatcgcagacacttccatcggctgaacactccataccttcaacacacttccaatcag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  34439225 gaagcatctttccctccgatccactcccacgacgacgacgccatatcgcagacacttccatcggcggaacactccataccttcaacacacttccaatcag 34439324  T
Q  214 gttccctatcagcaaaaatcataaccatagtatgaaaagcttccaaagcccaagca--atatgtgagaatgaagtgtttcagctgccattttccaaactc 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||  | ||||||||||||||||||||||||||||||||||||||||    
T  34439325 gttccctatcagcaaaaatcataaccatagtatgaaaagcttccaacgcccaagcaagacatgtgagaatgaagtgtttcagctgccattttccaaactc 34439424  T
Q  312 accacagtatttttcaagcatctcatcgatgcagatcttttccgttcccacctttttggatggcggtgacatgatcggtgagtggagatcatcggaaaat 411  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34439425 accacagtatttctcaagcatctcatcgatgcagatcttttccgttcccgcctttttggacggcggtgacatgatcggtgagtggagatcatcggaaaat 34439524  T
Q  412 gaggacaatgtggccgccatcggtaatattctgtgcttgaaaggtgggtag 462  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34439525 gaggacaatgtggccgccatcggtaatattctgtgcttgaaaggtgggtag 34439575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 353
Target Start/End: Original strand, 34422272 - 34422608
Alignment:
Q  19 tgaacgaaccaatcatacaaccagtaaagaaaacagcttgaacaagtccaactttaaacttgtcaccacatatcaaactccactcagtcaccgtagaagc 118  Q
    ||||| ||||||||||||| |||| |||||||| |||||||||||||||||  |||||||| |||||||| ||||||||||| |||| ||||||||||||    
T  34422272 tgaactaaccaatcatacacccagcaaagaaaagagcttgaacaagtccaatcttaaacttatcaccacaaatcaaactccattcagacaccgtagaagc 34422371  T
Q  119 atctttccctccgatccactcccacgacgacgacgccatatcgcagacacttccatcggctgaacactccataccttcaacacacttccaatcaggttcc 218  Q
    | |||  ||  | | ||||| |||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  34422372 accttcaccagcaacccactgccacgacgacgatgccatatcgcagacacttccattggcggaacactccataccttcaacacacttccaatcaggttcc 34422471  T
Q  219 ctatcagcaaaaatcataaccatagtatgaaaagcttccaaagcccaagcaata--tgtgagaatgaagtgtttcagctgccattttccaaactcaccac 316  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||    
T  34422472 ctatcagcaaaaatcataaccatagtatgaaaagcttccaacgcccaagcaagacttgtgagaatgaagtgtttcagctgccattttccaaactcaccac 34422571  T
Q  317 agtatttttcaagcatctcatcgatgcagatcttttc 353  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  34422572 agtatttctcaagcatctcatcgatgcagattttttc 34422608  T

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