View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17491_low_3 (Length: 398)
Name: NF17491_low_3
Description: NF17491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17491_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 13 - 380
Target Start/End: Complemental strand, 45518141 - 45517773
Alignment:
| Q |
13 |
cataggtgtaacagaaacatggacggaagaattaccgagacagatataaagcaggtcattatttaatttaataaacattactaacatatagtagcaattg |
112 |
Q |
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| T |
45518141 |
cataggtgtaacagaaacatggacggaagaattaccgagacagatataaagcaggtcattatttaatttaataaacattactaacatatagtagcaattg |
45518042 |
T |
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| Q |
113 |
ataccatttcaattatcatatgttcattg-tcatattcagcatgtagatcatttggcacttccggagacaaactttaaaataatttcaagtggggtgtac |
211 |
Q |
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| T |
45518041 |
acaccatttcaattatcatatgttcattggtcatattcagcatgtagatcatttggcacttccggagacaaactttaaaatcatttcaagtggggtgtac |
45517942 |
T |
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| Q |
212 |
acatacagttctgattctgaatgtttttaagagtaattgaattgatgatattatgcagacaatattattaaccgcttccataaataagctatcggtgaca |
311 |
Q |
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| T |
45517941 |
acatacagttcttattctgaatgtttttaagagtaattgaattgatgatattatacagacaatattattaaccgcttccataaataagctatcggtgaca |
45517842 |
T |
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| Q |
312 |
cgtgatgaagcagaagactatgcagccttgataatggaatctgtggacaacaaaaacaaaggctacatt |
380 |
Q |
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| T |
45517841 |
cgtgatgaagcagaagactatgcagccttgataatggaatctgtggacaacaaaaacaaaggctacatt |
45517773 |
T |
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